myRT

myRT report for GCA_001614375.1_ASM161437v1

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Seq: LVLK01000249.1 Escherichia coli strain cattle1 cattle1_contig_492, whole genome shotgun sequence (14042 bp)
Overview 1 RT 1: 11131-13999 bp Neighborhood of RT #1 [11131, 14040] DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 11131-11328 bp Feature: gene Location: 11569-11715 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11581-11692 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 581 -1 1 692 bp Feature: gene Location: 11831-13063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12032-12686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2032-1 2686 bp Feature: domain Description: GIIM Note: maturase Location: 12764-12986 bp Feature: domain Description: GIIM Note: maturase Location: 1 2764-1 2986 bp Feature: gene Location: 13525-14040 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13546-13999 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 3546-1 3999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: LVLK01000244.1 Escherichia coli strain cattle1 cattle1_contig_495, whole genome shotgun sequence (29354 bp)
Overview 1 RT 1: 18863-21752 bp Neighborhood of RT #1 [18863, 21752] RVT-GII GIIM RVT-GII Feature: gene Location: 18863-19081 bp Feature: gene Location: 19124-19294 bp Feature: gene Location: 19457-20110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19460-19868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19460-19868 bp Feature: domain Description: GIIM Note: maturase Location: 19916-20108 bp Feature: domain Description: GIIM Note: maturase Location: 19916-2 0108 bp Feature: gene Location: 20083-20517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20275-20491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 75-2 0491 bp Feature: gene Location: 20686-20883 bp Feature: gene Location: 21426-21752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LVLK01000295.1 Escherichia coli strain cattle1 cattle1_contig_84, whole genome shotgun sequence (5331 bp)
Overview 1 RT 1: 272-4841 bp Neighborhood of RT #1 [272, 4843] PRK03657 PRK10280 RVT-GII GIIM APH Feature: gene Location: 272-790 bp Feature: domain Description: PRK03657 Location: 293-788 bp Feature: domain Description: PRK03 657 Location: 293 -788 bp Feature: gene Location: 834-1691 bp Feature: domain Description: PRK10280 Location: 837-1686 bp Feature: domain Description: PRK10280 Location: 83 7-1686 bp Feature: gene Location: 1857-3380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130-2862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213 0-2862 bp Feature: domain Description: GIIM Note: maturase Location: 2937-3135 bp Feature: domain Description: GIIM Note: maturase Location: 293 7-3 13 5 bp Feature: gene Location: 3404-3601 bp Feature: gene Location: 4028-4843 bp Feature: domain Description: APH Location: 4106-4841 bp Feature: domain Description: APH Location: 4106-4841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK03657 (2-oxo-tetronate isomerase), APH (pfam01636), PRK10280 (peptidyl-dipeptidase Dcp)