myRT

myRT report for GCA_001614775.1_ASM161477v1

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Seq: LVMB01000035.1 Escherichia coli strain cattle18 cattle18_contig_46, whole genome shotgun sequence (8769 bp)
Overview 1 RT 1: 5448-8556 bp Neighborhood of RT #1 [5448, 8621] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 5448-5747 bp Feature: gene Location: 5731-6177 bp Feature: domain Description: PHA02517 Location: 5734-6175 bp Feature: domain Description: PHA0251 7 Location: 5734-61 75 bp Feature: gene Location: 6294-7817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6567-7299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6567-7299 bp Feature: domain Description: GIIM Note: maturase Location: 7374-7572 bp Feature: domain Description: GIIM Note: maturase Location: 7374-7572 bp Feature: gene Location: 7771-8196 bp Feature: gene Location: 8409-8621 bp Feature: domain Description: PHA02517 Location: 8412-8556 bp Feature: domain Description: PHA0251 7 Location: 841 2-8556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LVMB01000073.1 Escherichia coli strain cattle18 cattle18_contig_92, whole genome shotgun sequence (268599 bp)
Overview 1 RT 1: 310-9404 bp Neighborhood of RT #1 [310, 9406] Ail_Lom phage_tail_N 7tmA_amine_R-like Peptidase_S74 APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 310-909 bp Feature: domain Description: Ail_Lom Location: 313-907 bp Feature: domain Description: Ail_Lom Location: 313-907 bp Feature: gene Location: 974-4750 bp Feature: domain Description: phage_tail_N Location: 977-1376 bp Feature: domain Description: phage_tail_N Location: 977-1376 bp Feature: domain Description: 7tmA_amine_R-like Location: 1790-3170 bp Feature: domain Description: 7tmA_amine_R-like Location: 1790-3170 bp Feature: domain Description: Peptidase_S74 Location: 4319-4466 bp Feature: domain Description: Peptidase_S74 Location: 4319-4466 bp Feature: domain Description: APC_N_CC Location: 4619-4742 bp Feature: domain Description: APC_N_CC Location: 4619-4742 bp Feature: gene Location: 5378-6982 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5669-6260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5669-62 60 bp Feature: domain Description: TIR_2 Location: 6587-6920 bp Feature: domain Description: TIR_2 Location: 6587-692 0 bp Feature: gene Location: 7340-7600 bp Feature: domain Description: PRK10597 Location: 7343-7583 bp Feature: domain Description: PRK10597 Location: 7343-7583 bp Feature: gene Location: 7820-9406 bp Feature: domain Description: prfC Location: 7838-9404 bp Feature: domain Description: prfC Location: 7838-9404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: LVMB01000074.1 Escherichia coli strain cattle18 cattle18_contig_93, whole genome shotgun sequence (331092 bp)
Overview 1 RT 1: 16691-19677 bp Neighborhood of RT #1 [16691, 19677] RVT-GII GIIM RVT-GII Feature: gene Location: 16691-16876 bp Feature: gene Location: 17049-17219 bp Feature: gene Location: 17382-18035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17385-17793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173 85-17793 bp Feature: domain Description: GIIM Note: maturase Location: 17841-18033 bp Feature: domain Description: GIIM Note: maturase Location: 17841-1803 3 bp Feature: gene Location: 18008-18442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18200-18416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18200-18416 bp Feature: gene Location: 18611-18808 bp Feature: gene Location: 19351-19677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)