myRT

myRT report for GCA_001614795.1_ASM161479v1

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Seq: LVMC01000097.1 Escherichia coli strain cattle19 cattle19_contig_113, whole genome shotgun sequence (256768 bp)
Overview 1 RT 1: 249152-256020 bp Neighborhood of RT #1 [249152, 256139] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 249152-250738 bp Feature: domain Description: prfC Location: 249170-250736 bp Feature: domain Description: prfC Location: 2491 70-250736 bp Feature: gene Location: 250958-251218 bp Feature: domain Description: PRK10597 Location: 250961-251201 bp Feature: domain Description: PRK1 0597 Location: 250961 -251 201 bp Feature: gene Location: 251578-253182 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251869-252460 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251 869-252460 bp Feature: domain Description: TIR_2 Location: 252787-253075 bp Feature: domain Description: TIR_2 Location: 252787-253075 bp Feature: gene Location: 253627-254211 bp Feature: domain Description: Caudo_TAP Location: 253843-254200 bp Feature: domain Description: Caudo_TAP Location: 253843-254200 bp Feature: gene Location: 254211-256139 bp Feature: domain Description: Phage_fiber_2 Location: 254226-254349 bp Feature: domain Description: Phage_fiber_2 Location: 254226-254349 bp Feature: domain Description: Collar Location: 255447-255585 bp Feature: domain Description: Collar Location: 255447-255585 bp Feature: domain Description: Phage_fiber Location: 255636-255675 bp Feature: domain Description: Phage_fiber Location: 255636-255675 bp Feature: domain Description: Phage_fiber Location: 255732-255771 bp Feature: domain Description: Phage_fiber Location: 255732-255771 bp Feature: domain Description: Phage_fiber Location: 255945-255981 bp Feature: domain Description: Phage_fiber Location: 255945-255981 bp Feature: domain Description: Phage_fiber Location: 255987-256020 bp Feature: domain Description: Phage_fiber Location: 255987-256020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: LVMC01000044.1 Escherichia coli strain cattle19 cattle19_contig_47, whole genome shotgun sequence (7066 bp)
Overview 1 RT 1: 2607-6607 bp Neighborhood of RT #1 [2607, 6615] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2607-3968 bp Feature: domain Description: DcuC Location: 2610-3942 bp Feature: domain Description: DcuC Location: 2 610-3942 bp Feature: gene Location: 4021-4392 bp Feature: gene Location: 4614-5060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4920-5022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 0-502 2 bp Feature: gene Location: 5108-5257 bp Feature: gene Location: 5584-6615 bp Feature: domain Description: Asparaginase_2 Location: 5674-6607 bp Feature: domain Description: Asparaginase_2 Location: 5674-6607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: LVMC01000055.1 Escherichia coli strain cattle19 cattle19_contig_60, whole genome shotgun sequence (13582 bp)
Overview 1 RT 1: 1183-4910 bp Neighborhood of RT #1 [1183, 4915] InsE PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 1183-1410 bp Feature: gene Location: 1515-2252 bp Feature: domain Description: InsE Location: 1527-1779 bp Feature: domain Description: InsE Location: 1527-1779 bp Feature: domain Description: PHA02517 Location: 1851-2187 bp Feature: domain Description: PHA02517 Location: 1851-2187 bp Feature: gene Location: 2844-4367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117-3849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 117-3 849 bp Feature: domain Description: GIIM Note: maturase Location: 3924-4122 bp Feature: domain Description: GIIM Note: maturase Location: 3 924-4122 bp Feature: gene Location: 4532-4663 bp Feature: domain Description: PHA02517 Location: 4535-4661 bp Feature: domain Description: PHA02517 Location: 453 5-4661 bp Feature: gene Location: 4694-4915 bp Feature: domain Description: PHA02517 Location: 4697-4910 bp Feature: domain Description: PHA02517 Location: 4697-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)