myRT

myRT report for GCA_001614805.1_ASM161480v1

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Seq: LVMD01000222.1 Escherichia coli strain swine1 swine1_contig_331, whole genome shotgun sequence (34668 bp)
Overview 1 RT 1: 15760-22322 bp Neighborhood of RT #1 [15760, 22330] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 15760-16035 bp Feature: domain Description: DUF5405 Location: 15778-16018 bp Feature: domain Description: DUF5405 Location: 1 5778-1 601 8 bp Feature: gene Location: 16025-18295 bp Feature: domain Description: Phage_GPA Location: 16424-17411 bp Feature: domain Description: Phage_GPA Location: 1 6424-1 741 1 bp Feature: gene Location: 18622-19611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18739-19300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8739-1 9300 bp Feature: gene Location: 19613-20965 bp Feature: domain Description: ABC_ATPase Location: 19673-20396 bp Feature: domain Description: ABC_ATPase Location: 1 9673-20396 bp Feature: gene Location: 21296-22330 bp Feature: domain Description: Q Location: 21299-22322 bp Feature: domain Description: Q Location: 21 299-22322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)

Seq: LVMD01000062.1 Escherichia coli strain swine1 swine1_contig_79, whole genome shotgun sequence (3596 bp)
Overview 1 RT 1: 2-2408 bp Neighborhood of RT #1 [2, 2473] RVT-GII GIIM PHA02517 Feature: gene Location: 2-1456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-1007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 75-1007 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1280 bp Feature: domain Description: GIIM Note: maturase Location: 1082 -12 80 bp Feature: gene Location: 1410-1835 bp Feature: gene Location: 2048-2473 bp Feature: domain Description: PHA02517 Location: 2072-2408 bp Feature: domain Description: PHA02 517 Location: 2 072 -2 408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)