myRT

myRT report for GCA_001614875.1_ASM161487v1

Download annotations/find similar RTs

Seq: LVMG01000156.1 Escherichia coli strain swine4 swine4_contig_252, whole genome shotgun sequence (11662 bp)
Overview 1 RT 1: 1075-4061 bp Neighborhood of RT #1 [1075, 4061] RVT-GII GIIM RVT-GII Feature: gene Location: 1075-1260 bp Feature: gene Location: 1433-1603 bp Feature: gene Location: 1766-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769-2177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 769-21 77 bp Feature: domain Description: GIIM Note: maturase Location: 2225-2417 bp Feature: domain Description: GIIM Note: maturase Location: 2225-241 7 bp Feature: gene Location: 2392-2826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584-2800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584-2800 bp Feature: gene Location: 2995-3192 bp Feature: gene Location: 3735-4061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LVMG01000231.1 Escherichia coli strain swine4 swine4_contig_389, whole genome shotgun sequence (30723 bp)
Overview 1 RT 1: 21066-29487 bp Neighborhood of RT #1 [21066, 29495] prfC PRK10597 RVT-Retrons TIR_2 phage_tail_N Peptidase_S74 APC_N_CC Feature: gene Location: 21066-22652 bp Feature: domain Description: prfC Location: 21084-22650 bp Feature: domain Description: prfC Location: 2 1084-2 2 650 bp Feature: gene Location: 22872-23132 bp Feature: domain Description: PRK10597 Location: 22875-23115 bp Feature: domain Description: PRK10597 Location: 2 2 875-2 3115 bp Feature: gene Location: 23490-25094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23781-24372 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3781-2 4372 bp Feature: domain Description: TIR_2 Location: 24699-25032 bp Feature: domain Description: TIR_2 Location: 2 4699-2 5032 bp Feature: gene Location: 25424-25597 bp Feature: gene Location: 25722-29495 bp Feature: domain Description: phage_tail_N Location: 25725-26124 bp Feature: domain Description: phage_tail_N Location: 2 572 5-2 612 4 bp Feature: domain Description: Peptidase_S74 Location: 29064-29211 bp Feature: domain Description: Peptidase_S74 Location: 2 9064-2 92 11 bp Feature: domain Description: APC_N_CC Location: 29364-29487 bp Feature: domain Description: APC_N_CC Location: 2 9364-2 9487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: LVMG01000271.1 Escherichia coli strain swine4 swine4_contig_480, whole genome shotgun sequence (61108 bp)
Overview 1 RT 1: 14530-18813 bp Neighborhood of RT #1 [14530, 18821] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 14530-15435 bp Feature: gene Location: 15693-15890 bp Feature: gene Location: 15921-16460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16251-16329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16251-163 29 bp Feature: gene Location: 16488-17009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16494-16776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16494-16776 bp Feature: domain Description: GIIM Note: maturase Location: 16824-17004 bp Feature: domain Description: GIIM Note: maturase Location: 16824-17004 bp Feature: gene Location: 17331-17519 bp Feature: gene Location: 17559-18821 bp Feature: domain Description: YesM Location: 18072-18813 bp Feature: domain Description: YesM Location: 18072-18813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)