myRT

myRT report for GCA_001614905.1_ASM161490v1

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Seq: LVPA01000085.1 Escherichia coli strain sheep5 sheep5_contig_103, whole genome shotgun sequence (104928 bp)
Overview 1 RT 1: 88632-92239 bp Neighborhood of RT #1 [88632, 92239] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 88632-88760 bp Feature: gene Location: 88610-89089 bp Feature: domain Description: PHA02517 Location: 88670-89024 bp Feature: domain Description: PHA0251 7 Location: 88670-89024 bp Feature: gene Location: 89681-91204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89954-90686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89954-90686 bp Feature: domain Description: GIIM Note: maturase Location: 90761-90959 bp Feature: domain Description: GIIM Note: maturase Location: 90761 -90959 bp Feature: gene Location: 91300-91773 bp Feature: domain Description: PHA02517 Location: 91306-91762 bp Feature: domain Description: PHA0251 7 Location: 91 306-91 762 bp Feature: gene Location: 91856-92239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LVPA01000037.1 Escherichia coli strain sheep5 sheep5_contig_45, whole genome shotgun sequence (4877 bp)
Overview 1 RT 1: 850-4877 bp Neighborhood of RT #1 [850, 4876] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Antirestrict Feature: gene Location: 850-996 bp Feature: gene Location: 1086-1487 bp Feature: domain Description: DUF932 Location: 1197-1479 bp Feature: domain Description: DUF932 Location: 1197-1479 bp Feature: gene Location: 1979-3757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2240-3035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 40-3035 bp Feature: domain Description: Intron_maturas2 Location: 3161-3386 bp Feature: domain Description: Intron_maturas2 Location: 3161-3386 bp Feature: domain Description: HNHc Note: nucleases Location: 3581-3731 bp Feature: domain Description: HNHc Note: nucleases Location: 3581-3731 bp Feature: gene Location: 3930-4316 bp Feature: domain Description: DUF932 Location: 3936-4281 bp Feature: domain Description: DUF932 Location: 3936-42 81 bp Feature: gene Location: 4406-4876 bp Feature: domain Description: Antirestrict Location: 4604-4877 bp Feature: domain Description: Antirestrict Location: 4604-4877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Antirestrict (pfam03230)