myRT

myRT report for GCA_001615045.1_ASM161504v1

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Seq: LVMK01000010.1 Escherichia coli strain swine8 swine8_contig_12, whole genome shotgun sequence (1084 bp)
Overview 1 RT 1: 3-1081 bp Neighborhood of RT #1 [3, 1081] RVT-GII Feature: gene Location: 3-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-429 bp Feature: gene Location: 722-1081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LVMK01000015.1 Escherichia coli strain swine8 swine8_contig_19, whole genome shotgun sequence (1186 bp)
Overview 1 RT 1: 1-850 bp Neighborhood of RT #1 [1, 1095] RVT-GII GIIM Feature: gene Location: 1-1095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43-577 bp Feature: domain Description: GIIM Note: maturase Location: 652-850 bp Feature: domain Description: GIIM Note: maturase Location: 652 -850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LVMK01000266.1 Escherichia coli strain swine8 swine8_contig_402, whole genome shotgun sequence (51215 bp)
Overview 1 RT 1: 46699-50573 bp Neighborhood of RT #1 [46699, 50578] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 46699-47415 bp Feature: domain Description: rph Location: 46702-47410 bp Feature: domain Description: rph Location: 46702-47410 bp Feature: gene Location: 47466-48122 bp Feature: domain Description: pyrE Location: 47484-48117 bp Feature: domain Description: pyrE Location: 47484-48117 bp Feature: gene Location: 48295-49371 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48547-49096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48547-49096 bp Feature: gene Location: 49417-50013 bp Feature: domain Description: slmA Location: 49423-49999 bp Feature: domain Description: slmA Location: 49423 -49999 bp Feature: gene Location: 50120-50578 bp Feature: domain Description: dut Location: 50126-50573 bp Feature: domain Description: dut Location: 50126-50573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LVMK01000287.1 Escherichia coli strain swine8 swine8_contig_448, whole genome shotgun sequence (138480 bp)
Overview 1 RT 1: 3756-7479 bp Neighborhood of RT #1 [3756, 7479] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 3756-4787 bp Feature: domain Description: LacI Location: 3798-3933 bp Feature: domain Description: LacI Location: 3798-3933 bp Feature: domain Description: PBP1_GntR Location: 3972-4782 bp Feature: domain Description: PBP1_GntR Location: 3972-4 782 bp Feature: gene Location: 4821-5006 bp Feature: gene Location: 5314-6165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317-5725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317-5725 bp Feature: domain Description: GIIM Note: maturase Location: 5773-5995 bp Feature: domain Description: GIIM Note: maturase Location: 5773-5995 bp Feature: gene Location: 6138-6572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6330-6546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6330-654 6 bp Feature: gene Location: 6741-6938 bp Feature: gene Location: 7297-7479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)