myRT

myRT report for GCA_001615295.1_ASM161529v1

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Seq: LVMT01000012.1 Escherichia coli strain swine17 swine17_contig_11, whole genome shotgun sequence (1071 bp)
Overview 1 RT 1: 3-1067 bp Neighborhood of RT #1 [3, 1069] RVT-Retrons Q Feature: gene Location: 3-758 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9-516 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9-51 6 bp Feature: gene Location: 776-1069 bp Feature: domain Description: Q Location: 779-1067 bp Feature: domain Description: Q Location: 779-1 067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536)

Seq: LVMT01000139.1 Escherichia coli strain swine17 swine17_contig_169, whole genome shotgun sequence (2358 bp)
Overview 1 RT 1: 144-2152 bp Neighborhood of RT #1 [144, 2247] PRK13704 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 144-491 bp Feature: domain Description: PRK13704 Location: 147-486 bp Feature: domain Description: PRK13704 Location: 147-486 bp Feature: gene Location: 521-1072 bp Feature: gene Location: 1240-2247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 49-1444 bp Feature: domain Description: Intron_maturas2 Location: 1558-1816 bp Feature: domain Description: Intron_maturas2 Location: 1558-1816 bp Feature: domain Description: HNHc Note: nucleases Location: 1990-2152 bp Feature: domain Description: HNHc Note: nucleases Location: 1990-2 152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13704 (plasmid SOS inhibition protein A; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LVMT01000145.1 Escherichia coli strain swine17 swine17_contig_178, whole genome shotgun sequence (2472 bp)
Overview 1 RT 1: 192-2406 bp Neighborhood of RT #1 [192, 2471] RVT-GII GIIM PHA02517 Feature: gene Location: 192-1715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1197 bp Feature: domain Description: GIIM Note: maturase Location: 1272-1470 bp Feature: domain Description: GIIM Note: maturase Location: 1272-1470 bp Feature: gene Location: 2307-2471 bp Feature: domain Description: PHA02517 Location: 2319-2406 bp Feature: domain Description: PHA02517 Location: 23 19-2406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LVMT01000418.1 Escherichia coli strain swine17 swine17_contig_539, whole genome shotgun sequence (14862 bp)
Overview 1 RT 1: 4372-7261 bp Neighborhood of RT #1 [4372, 7261] RVT-GII GIIM RVT-GII Feature: gene Location: 4372-4590 bp Feature: gene Location: 4633-4803 bp Feature: gene Location: 4966-5619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4969-5377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 969-5377 bp Feature: domain Description: GIIM Note: maturase Location: 5425-5617 bp Feature: domain Description: GIIM Note: maturase Location: 54 25-5617 bp Feature: gene Location: 5592-6026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5784-6000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5784 -6000 bp Feature: gene Location: 6195-6392 bp Feature: gene Location: 6935-7261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)