myRT

myRT report for GCA_001615595.1_ASM161559v1

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Seq: LVNF01000085.1 Escherichia coli strain swine29 swine29_contig_102, whole genome shotgun sequence (303054 bp)
Overview 1 RT 1: 258591-266997 bp Neighborhood of RT #1 [258591, 267005] prfC PRK10597 RVT-Retrons TIR_2 phage_tail_N Peptidase_S74 APC_N_CC Feature: gene Location: 258591-260177 bp Feature: domain Description: prfC Location: 258609-260175 bp Feature: domain Description: prfC Location: 258609-2601 75 bp Feature: gene Location: 260397-260657 bp Feature: domain Description: PRK10597 Location: 260400-260640 bp Feature: domain Description: PRK1 0597 Location: 260400-260640 bp Feature: gene Location: 261015-262619 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 261306-261897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 261 306-261 897 bp Feature: domain Description: TIR_2 Location: 262224-262557 bp Feature: domain Description: TIR_2 Location: 262224-262557 bp Feature: gene Location: 262949-263122 bp Feature: gene Location: 263247-267005 bp Feature: domain Description: phage_tail_N Location: 263250-263649 bp Feature: domain Description: phage_tail_N Location: 263250-263649 bp Feature: domain Description: Peptidase_S74 Location: 266574-266721 bp Feature: domain Description: Peptidase_S74 Location: 266574-266721 bp Feature: domain Description: APC_N_CC Location: 266874-266997 bp Feature: domain Description: APC_N_CC Location: 266874-266997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: LVNF01000048.1 Escherichia coli strain swine29 swine29_contig_59, whole genome shotgun sequence (22799 bp)
Overview 1 RT 1: 16054-18943 bp Neighborhood of RT #1 [16054, 18943] RVT-GII GIIM RVT-GII Feature: gene Location: 16054-16272 bp Feature: gene Location: 16315-16485 bp Feature: gene Location: 16648-17301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16651-17059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16651-17059 bp Feature: domain Description: GIIM Note: maturase Location: 17107-17299 bp Feature: domain Description: GIIM Note: maturase Location: 17107-172 99 bp Feature: gene Location: 17274-17708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17466-17682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17466-17682 bp Feature: gene Location: 17877-18074 bp Feature: gene Location: 18617-18943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)