myRT

myRT report for GCA_001615615.1_ASM161561v1

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Seq: LVNG01000095.1 Escherichia coli strain swine30 swine30_contig_116, whole genome shotgun sequence (70625 bp)
Overview 1 RT 1: 35402-41433 bp Neighborhood of RT #1 [35402, 41433] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 35402-36322 bp Feature: domain Description: AbiEii Location: 35444-36185 bp Feature: domain Description: AbiEii Location: 35444-361 85 bp Feature: gene Location: 36309-37112 bp Feature: domain Description: AbiEi_3_N Location: 36342-36603 bp Feature: domain Description: AbiEi_3_N Location: 36342-36603 bp Feature: domain Description: AbiEi_3 Location: 36615-37071 bp Feature: domain Description: AbiEi_3 Location: 3661 5-37071 bp Feature: gene Location: 37407-40616 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 37935-38424 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 37935-38424 bp Feature: domain Description: nitrilase Location: 39930-40527 bp Feature: domain Description: nitrilase Location: 39930-40527 bp Feature: gene Location: 40777-40917 bp Feature: domain Description: Phage_ASH Location: 40804-40897 bp Feature: domain Description: Phage_ASH Location: 40804-40897 bp Feature: gene Location: 40963-41433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: LVNG01000019.1 Escherichia coli strain swine30 swine30_contig_22, whole genome shotgun sequence (2430 bp)
Overview 1 RT 1: 671-2303 bp Neighborhood of RT #1 [671, 2338] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 671-2338 bp Feature: domain Description: RVT_N Location: 719-956 bp Feature: domain Description: RVT_N Location: 719-956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1649 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1934 bp Feature: domain Description: GIIM Note: maturase Location: 1700-1934 bp Feature: domain Description: HNHc Note: nucleases Location: 2144-2303 bp Feature: domain Description: HNHc Note: nucleases Location: 2 144-2 303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LVNG01000080.1 Escherichia coli strain swine30 swine30_contig_96, whole genome shotgun sequence (36616 bp)
Overview 1 RT 1: 27085-30140 bp Neighborhood of RT #1 [27085, 30140] RVT-GII RVT-GII GIIM Feature: gene Location: 27085-27990 bp Feature: gene Location: 28128-28319 bp Feature: gene Location: 28476-29015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28806-28884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28806-28884 bp Feature: gene Location: 29043-29564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29049-29331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29049-293 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 29379-29559 bp Feature: domain Description: GIIM Note: maturase Location: 293 79-29559 bp Feature: gene Location: 29663-29842 bp Feature: gene Location: 29952-30140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)