myRT

myRT report for GCA_001615675.1_ASM161567v1

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Seq: LVNJ01000034.1 Escherichia coli strain swine33 swine33_contig_46, whole genome shotgun sequence (20055 bp)
Overview 1 RT 1: 1267-3778 bp Neighborhood of RT #1 [1267, 3778] RVT-UG17 SLATT_5 Feature: gene Location: 1267-1404 bp Feature: gene Location: 1420-1554 bp Feature: gene Location: 1662-3032 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1890-2496 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 890-2496 bp Feature: gene Location: 3010-3561 bp Feature: domain Description: SLATT_5 Location: 3016-3532 bp Feature: domain Description: SLATT_5 Location: 301 6-3532 bp Feature: gene Location: 3599-3778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160)

Seq: LVNJ01000048.1 Escherichia coli strain swine33 swine33_contig_65, whole genome shotgun sequence (65770 bp)
Overview 1 RT 1: 39989-43872 bp Neighborhood of RT #1 [39989, 43877] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 39989-40447 bp Feature: domain Description: dut Location: 39995-40442 bp Feature: domain Description: dut Location: 39995-40442 bp Feature: gene Location: 40554-41150 bp Feature: domain Description: slmA Location: 40560-41136 bp Feature: domain Description: slmA Location: 40560-41136 bp Feature: gene Location: 41196-42155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41331-41880 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41331-41880 bp Feature: gene Location: 42453-43109 bp Feature: domain Description: pyrE Location: 42471-43104 bp Feature: domain Description: pyrE Location: 42 471-43104 bp Feature: gene Location: 43161-43877 bp Feature: domain Description: rph Location: 43164-43872 bp Feature: domain Description: rph Location: 43164-43872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)