myRT

myRT report for GCA_001615805.1_ASM161580v1

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Seq: LVNQ01000098.1 Escherichia coli strain swine40 swine40_contig_130, whole genome shotgun sequence (134916 bp)
Overview 1 RT 1: 27336-35037 bp Neighborhood of RT #1 [27336, 35174] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 27336-28589 bp Feature: domain Description: proA Location: 27363-28554 bp Feature: domain Description: proA Location: 27363-28554 bp Feature: gene Location: 29143-29613 bp Feature: gene Location: 29960-33169 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30488-30977 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30488-30977 bp Feature: domain Description: nitrilase Location: 32483-33080 bp Feature: domain Description: nitrilase Location: 32483-33080 bp Feature: gene Location: 33464-34267 bp Feature: domain Description: AbiEi_3_N Location: 33497-33758 bp Feature: domain Description: AbiEi_3_N Location: 33497-33758 bp Feature: domain Description: AbiEi_3 Location: 33770-34226 bp Feature: domain Description: AbiEi_3 Location: 33770-34226 bp Feature: gene Location: 34254-35174 bp Feature: domain Description: AbiEii Location: 34296-35037 bp Feature: domain Description: AbiEii Location: 34296-35037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: LVNQ01000013.1 Escherichia coli strain swine40 swine40_contig_17, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LVNQ01000030.1 Escherichia coli strain swine40 swine40_contig_36, whole genome shotgun sequence (7030 bp)
Overview 1 RT 1: 3048-6374 bp Neighborhood of RT #1 [3048, 6374] FRG RVT-Retrons HTH_XRE Feature: gene Location: 3048-3197 bp Feature: gene Location: 3236-4600 bp Feature: domain Description: FRG Location: 3803-4088 bp Feature: domain Description: FRG Location: 3 803 -4088 bp Feature: gene Location: 4709-5659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4889-5432 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4889-543 2 bp Feature: gene Location: 5625-5945 bp Feature: domain Description: HTH_XRE Location: 5640-5799 bp Feature: domain Description: HTH_XRE Location: 5640-5799 bp Feature: gene Location: 5982-6374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: LVNQ01000065.1 Escherichia coli strain swine40 swine40_contig_82, whole genome shotgun sequence (28933 bp)
Overview 1 RT 1: 24448-28739 bp Neighborhood of RT #1 [24448, 28739] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24448-25710 bp Feature: domain Description: YesM Location: 24961-25702 bp Feature: domain Description: YesM Location: 24 961-25702 bp Feature: gene Location: 25740-25910 bp Feature: gene Location: 26260-26781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26266-26548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26266-2654 8 bp Feature: domain Description: GIIM Note: maturase Location: 26596-26776 bp Feature: domain Description: GIIM Note: maturase Location: 26596-26776 bp Feature: gene Location: 26809-27348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27139-27217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27139-27217 bp Feature: gene Location: 27379-27576 bp Feature: gene Location: 27834-28739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)