myRT

myRT report for GCA_001616045.1_ASM161604v1

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Seq: LVOA01000115.1 Escherichia coli strain swine50 swine50_contig_156, whole genome shotgun sequence (274032 bp)
Overview 1 RT 1: 8415-12258 bp Neighborhood of RT #1 [8415, 12263] Peptidase_S74 RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 8415-9455 bp Feature: domain Description: Peptidase_S74 Location: 9096-9243 bp Feature: domain Description: Peptidase_S74 Location: 9096-9243 bp Feature: gene Location: 9498-9785 bp Feature: gene Location: 9893-11263 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 10121-10727 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 01 21 -1 0727 bp Feature: gene Location: 11241-11792 bp Feature: domain Description: SLATT_5 Location: 11247-11763 bp Feature: domain Description: SLATT_5 Location: 1 1 247-1 1 763 bp Feature: gene Location: 12015-12263 bp Feature: domain Description: PRK10597 Location: 12018-12258 bp Feature: domain Description: PRK1 0597 Location: 1 201 8-1 2258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S74 (pfam13884), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: LVOA01000052.1 Escherichia coli strain swine50 swine50_contig_64, whole genome shotgun sequence (14324 bp)
Overview 1 RT 1: 194-3471 bp Neighborhood of RT #1 [194, 3471] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 194-619 bp Feature: domain Description: PHA02517 Location: 218-554 bp Feature: domain Description: PHA02 517 Location: 2 18-554 bp Feature: gene Location: 1211-2734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1484-2216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1484-2 2 16 bp Feature: domain Description: GIIM Note: maturase Location: 2291-2489 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 91-2 489 bp Feature: gene Location: 2857-3273 bp Feature: domain Description: PHA02517 Location: 2860-3265 bp Feature: domain Description: PHA02 517 Location: 2 860-32 65 bp Feature: gene Location: 3301-3471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)