myRT

myRT report for GCA_001616055.1_ASM161605v1

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Seq: LVOC01000092.1 Escherichia coli strain swine52 swine52_contig_124, whole genome shotgun sequence (318939 bp)
Overview 1 RT 1: 51262-60338 bp Neighborhood of RT #1 [51262, 60340] Ail_Lom phage_tail_N Peptidase_S74 APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 51262-51861 bp Feature: domain Description: Ail_Lom Location: 51265-51859 bp Feature: domain Description: Ail_Lom Location: 51 265-51 859 bp Feature: gene Location: 51926-55684 bp Feature: domain Description: phage_tail_N Location: 51929-52328 bp Feature: domain Description: phage_tail_N Location: 51 929-52328 bp Feature: domain Description: Peptidase_S74 Location: 55253-55400 bp Feature: domain Description: Peptidase_S74 Location: 55253-55400 bp Feature: domain Description: APC_N_CC Location: 55553-55676 bp Feature: domain Description: APC_N_CC Location: 55553-55676 bp Feature: gene Location: 56312-57916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56603-57194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56603-571 94 bp Feature: domain Description: TIR_2 Location: 57521-57854 bp Feature: domain Description: TIR_2 Location: 57521 -57854 bp Feature: gene Location: 58274-58534 bp Feature: domain Description: PRK10597 Location: 58277-58517 bp Feature: domain Description: PRK1 0597 Location: 58277-5851 7 bp Feature: gene Location: 58754-60340 bp Feature: domain Description: prfC Location: 58772-60338 bp Feature: domain Description: prfC Location: 58772-60338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: LVOC01000055.1 Escherichia coli strain swine52 swine52_contig_70, whole genome shotgun sequence (21990 bp)
Overview 1 RT 1: 16072-18961 bp Neighborhood of RT #1 [16072, 18961] RVT-GII GIIM RVT-GII Feature: gene Location: 16072-16290 bp Feature: gene Location: 16333-16503 bp Feature: gene Location: 16666-17319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16669-17077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16669-17077 bp Feature: domain Description: GIIM Note: maturase Location: 17125-17317 bp Feature: domain Description: GIIM Note: maturase Location: 1712 5-17317 bp Feature: gene Location: 17292-17726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17484-17700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17484-17700 bp Feature: gene Location: 17895-18092 bp Feature: gene Location: 18635-18961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)