myRT

myRT report for GCA_001616105.1_ASM161610v1

Download annotations/find similar RTs

Seq: LVOF01000109.1 Escherichia coli strain swine55 swine55_contig_141, whole genome shotgun sequence (197472 bp)
Overview 1 RT 1: 142462-146344 bp Neighborhood of RT #1 [142462, 146349] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 142462-143178 bp Feature: domain Description: rph Location: 142465-143173 bp Feature: domain Description: rph Location: 1 42465-1 431 73 bp Feature: gene Location: 143229-143885 bp Feature: domain Description: pyrE Location: 143247-143880 bp Feature: domain Description: pyrE Location: 1 43247-1 43880 bp Feature: gene Location: 144183-145142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 144318-144867 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4431 8-1 44867 bp Feature: gene Location: 145188-145784 bp Feature: domain Description: slmA Location: 145194-145770 bp Feature: domain Description: slmA Location: 1 451 94-1 45770 bp Feature: gene Location: 145891-146349 bp Feature: domain Description: dut Location: 145897-146344 bp Feature: domain Description: dut Location: 1 45897-1 46344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LVOF01000045.1 Escherichia coli strain swine55 swine55_contig_58, whole genome shotgun sequence (11048 bp)
Overview 1 RT 1: 8702-10687 bp Neighborhood of RT #1 [8702, 10932] PHA02517 RVT-GII GIIM Feature: gene Location: 8702-8965 bp Feature: gene Location: 9023-9469 bp Feature: domain Description: PHA02517 Location: 9026-9467 bp Feature: domain Description: PHA02 517 Location: 902 6-9467 bp Feature: gene Location: 9586-10932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9682-10414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9682 -10414 bp Feature: domain Description: GIIM Note: maturase Location: 10489-10687 bp Feature: domain Description: GIIM Note: maturase Location: 10489-10687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LVOF01000048.1 Escherichia coli strain swine55 swine55_contig_62, whole genome shotgun sequence (12583 bp)
Overview 1 RT 1: 53-1880 bp Neighborhood of RT #1 [53, 1885] RVT_N RVT-GII TnpB_IS66 Feature: gene Location: 53-976 bp Feature: RT Description: RVT_N Location: 101-344 bp Feature: RT Description: RVT_N Location: 101-3 44 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 89-959 bp Feature: gene Location: 1003-1410 bp Feature: gene Location: 1574-1885 bp Feature: domain Description: TnpB_IS66 Location: 1601-1880 bp Feature: domain Description: TnpB_IS66 Location: 1601-1880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII