myRT

myRT report for GCA_001616135.1_ASM161613v1

Download annotations/find similar RTs

Seq: LVOG01000043.1 Escherichia coli strain swine56 swine56_contig_52, whole genome shotgun sequence (14073 bp)
Overview 1 RT 1: 8341-11882 bp Neighborhood of RT #1 [8341, 11882] PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 8341-8751 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 8413-8725 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 841 3-8725 bp Feature: gene Location: 9013-9141 bp Feature: gene Location: 9253-11088 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9388-10084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9388-1 0084 bp Feature: gene Location: 11289-11462 bp Feature: gene Location: 11709-11882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: LVOG01000046.1 Escherichia coli strain swine56 swine56_contig_56, whole genome shotgun sequence (14960 bp)
Overview 1 RT 1: 1427-4575 bp Neighborhood of RT #1 [1427, 4589] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 1427-1804 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1430-1802 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1430-1802 bp Feature: gene Location: 1849-2124 bp Feature: domain Description: InsA Location: 1852-2116 bp Feature: domain Description: InsA Location: 1852 -2 116 bp Feature: gene Location: 2276-3763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2681-3371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 681-3371 bp Feature: gene Location: 3769-3936 bp Feature: gene Location: 4164-4589 bp Feature: domain Description: PRK10276 Location: 4167-4575 bp Feature: domain Description: PRK102 76 Location: 4167-4575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: LVOG01000052.1 Escherichia coli strain swine56 swine56_contig_63, whole genome shotgun sequence (19770 bp)
Overview 1 RT 1: 18033-19543 bp Neighborhood of RT #1 [18033, 19767] COG3547 PHA02517 RVT-GII GIIM Feature: gene Location: 18033-18422 bp Feature: domain Description: COG3547 Location: 18099-18360 bp Feature: domain Description: COG3 547 Location: 18099-183 60 bp Feature: gene Location: 18581-19027 bp Feature: domain Description: PHA02517 Location: 18584-19025 bp Feature: domain Description: PHA02517 Location: 18584-19025 bp Feature: gene Location: 19144-19767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19156-19249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19156-19249 bp Feature: domain Description: GIIM Note: maturase Location: 19324-19543 bp Feature: domain Description: GIIM Note: maturase Location: 193 24-19543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LVOG01000077.1 Escherichia coli strain swine56 swine56_contig_96, whole genome shotgun sequence (58021 bp)
Overview 1 RT 1: 38-7930 bp Neighborhood of RT #1 [38, 7941] RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Feature: gene Location: 38-241 bp Feature: gene Location: 480-2498 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1050-1500 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1050-1500 bp Feature: gene Location: 3754-5214 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4129-4336 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4 129-4 336 bp Feature: domain Description: INT_P4_C Location: 4555-5092 bp Feature: domain Description: INT_P4 _C Location: 4 555-5092 bp Feature: gene Location: 5359-7941 bp Feature: domain Description: mutS1 Location: 5410-7930 bp Feature: domain Description: mutS1 Location: 54 10-7930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)