myRT

myRT report for GCA_001616195.1_ASM161619v1

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Seq: LVOK01000082.1 Escherichia coli strain swine60 swine60_contig_100, whole genome shotgun sequence (318854 bp)
Overview 1 RT 1: 51262-60338 bp Neighborhood of RT #1 [51262, 60340] Ail_Lom phage_tail_N Peptidase_S74 APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 51262-51861 bp Feature: domain Description: Ail_Lom Location: 51265-51859 bp Feature: domain Description: Ail_Lom Location: 51 265-51 859 bp Feature: gene Location: 51926-55684 bp Feature: domain Description: phage_tail_N Location: 51929-52328 bp Feature: domain Description: phage_tail_N Location: 51 929-52328 bp Feature: domain Description: Peptidase_S74 Location: 55253-55400 bp Feature: domain Description: Peptidase_S74 Location: 55253-55400 bp Feature: domain Description: APC_N_CC Location: 55553-55676 bp Feature: domain Description: APC_N_CC Location: 55553-55676 bp Feature: gene Location: 56312-57916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56603-57194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56603-571 94 bp Feature: domain Description: TIR_2 Location: 57521-57854 bp Feature: domain Description: TIR_2 Location: 57521 -57854 bp Feature: gene Location: 58274-58534 bp Feature: domain Description: PRK10597 Location: 58277-58517 bp Feature: domain Description: PRK1 0597 Location: 58277-5851 7 bp Feature: gene Location: 58754-60340 bp Feature: domain Description: prfC Location: 58772-60338 bp Feature: domain Description: prfC Location: 58772-60338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: LVOK01000046.1 Escherichia coli strain swine60 swine60_contig_55, whole genome shotgun sequence (23535 bp)
Overview 1 RT 1: 4215-7921 bp Neighborhood of RT #1 [4215, 7926] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 4215-4346 bp Feature: gene Location: 4744-4941 bp Feature: gene Location: 5110-5544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5302-5518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5302 -5518 bp Feature: gene Location: 5517-6170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5520-5928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552 0-592 8 bp Feature: domain Description: GIIM Note: maturase Location: 5976-6168 bp Feature: domain Description: GIIM Note: maturase Location: 5976-6168 bp Feature: gene Location: 6546-6764 bp Feature: gene Location: 6895-7926 bp Feature: domain Description: LacI Location: 6937-7072 bp Feature: domain Description: LacI Location: 6937-7072 bp Feature: domain Description: PBP1_GntR Location: 7111-7921 bp Feature: domain Description: PBP1_GntR Location: 7111-792 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)