myRT

myRT report for GCA_001616255.1_ASM161625v1

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Seq: LVOM01000019.1 Escherichia coli strain swine62 swine62_contig_21, whole genome shotgun sequence (3774 bp)
Overview 1 RT 1: 1-3274 bp Neighborhood of RT #1 [1, 3339] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-291 bp Feature: gene Location: 212-541 bp Feature: domain Description: PHA02517 Location: 215-533 bp Feature: domain Description: PHA0251 7 Location: 21 5-533 bp Feature: gene Location: 751-2274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1024-1756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 024-1 756 bp Feature: domain Description: GIIM Note: maturase Location: 1831-2029 bp Feature: domain Description: GIIM Note: maturase Location: 1 831 -2029 bp Feature: gene Location: 2228-2653 bp Feature: gene Location: 2866-3339 bp Feature: domain Description: PHA02517 Location: 2956-3274 bp Feature: domain Description: PHA0251 7 Location: 2956-3274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LVOM01000059.1 Escherichia coli strain swine62 swine62_contig_69, whole genome shotgun sequence (102209 bp)
Overview 1 RT 1: 77185-83193 bp Neighborhood of RT #1 [77185, 83210] proA PRK09692 RVT-UG7 Psu Feature: gene Location: 77185-78438 bp Feature: domain Description: proA Location: 77212-78403 bp Feature: domain Description: proA Location: 772 12 -78403 bp Feature: gene Location: 78793-79977 bp Feature: domain Description: PRK09692 Location: 78799-79954 bp Feature: domain Description: PRK09692 Location: 78799-79954 bp Feature: gene Location: 79970-81598 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 80378-80807 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 80378-80807 bp Feature: gene Location: 81595-82335 bp Feature: gene Location: 82638-83210 bp Feature: domain Description: Psu Location: 82656-83193 bp Feature: domain Description: Psu Location: 82 656-83193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)