myRT

myRT report for GCA_001616275.1_ASM161627v1

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Seq: LVON01000021.1 Escherichia coli strain swine63 swine63_contig_30, whole genome shotgun sequence (15461 bp)
Overview 1 RT 1: 8386-12275 bp Neighborhood of RT #1 [8386, 12280] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 8386-8739 bp Feature: gene Location: 9098-9295 bp Feature: gene Location: 9464-9898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9656-9872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9656-9872 bp Feature: gene Location: 9871-10722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9874-10282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9874-1 0282 bp Feature: domain Description: GIIM Note: maturase Location: 10330-10555 bp Feature: domain Description: GIIM Note: maturase Location: 1 0330-1 0555 bp Feature: gene Location: 10900-11118 bp Feature: gene Location: 11249-12280 bp Feature: domain Description: LacI Location: 11291-11426 bp Feature: domain Description: LacI Location: 1 1 291 -1 1 426 bp Feature: domain Description: PBP1_GntR Location: 11465-12275 bp Feature: domain Description: PBP1 _GntR Location: 1 1 465-1 2275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: LVON01000059.1 Escherichia coli strain swine63 swine63_contig_77, whole genome shotgun sequence (587246 bp)
Overview 1 RT 1: 266993-274803 bp Neighborhood of RT #1 [266993, 274808] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 266993-269269 bp Feature: domain Description: Phage_GPA Location: 267392-268379 bp Feature: domain Description: Phage_GPA Location: 2 67392 -2 68379 bp Feature: gene Location: 269331-269591 bp Feature: gene Location: 269757-271301 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 270174-270627 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 70174-2 7062 7 bp Feature: gene Location: 271496-271642 bp Feature: gene Location: 271644-271784 bp Feature: gene Location: 271852-273042 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 272002-272584 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 72 002 -2 72 584 bp Feature: gene Location: 273039-273746 bp Feature: gene Location: 273789-274808 bp Feature: domain Description: Q Location: 273792-274803 bp Feature: domain Description: Q Location: 2 73792 -2 74803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)