myRT

myRT report for GCA_001616285.1_ASM161628v1

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Seq: LVOO01000102.1 Escherichia coli strain swine64 swine64_contig_125, whole genome shotgun sequence (162904 bp)
Overview 1 RT 1: 127679-133710 bp Neighborhood of RT #1 [127679, 133710] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 127679-128599 bp Feature: domain Description: AbiEii Location: 127721-128462 bp Feature: domain Description: AbiEii Location: 1 27721 -1 28462 bp Feature: gene Location: 128586-129389 bp Feature: domain Description: AbiEi_3_N Location: 128619-128880 bp Feature: domain Description: AbiEi_3_N Location: 1 2861 9-1 28880 bp Feature: domain Description: AbiEi_3 Location: 128892-129348 bp Feature: domain Description: AbiEi_3 Location: 1 28892-1 29348 bp Feature: gene Location: 129684-132893 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130212-130701 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 3021 2-1 30701 bp Feature: domain Description: nitrilase Location: 132207-132804 bp Feature: domain Description: nitrilase Location: 1 32207-1 32804 bp Feature: gene Location: 133054-133194 bp Feature: domain Description: Phage_ASH Location: 133081-133174 bp Feature: domain Description: Phage_ASH Location: 1 33081 -1 331 74 bp Feature: gene Location: 133240-133710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: LVOO01000045.1 Escherichia coli strain swine64 swine64_contig_53, whole genome shotgun sequence (11362 bp)
Overview 1 RT 1: 2-1031 bp Neighborhood of RT #1 [2, 1039] RVT-GII PRK10173 PRK10173 Feature: gene Location: 2-256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6-98 bp Feature: gene Location: 295-606 bp Feature: domain Description: PRK10173 Location: 298-517 bp Feature: domain Description: PRK10173 Location: 2 98-517 bp Feature: gene Location: 590-1039 bp Feature: domain Description: PRK10173 Location: 593-1031 bp Feature: domain Description: PRK10173 Location: 593-1031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: LVOO01000006.1 Escherichia coli strain swine64 swine64_contig_7, whole genome shotgun sequence (1422 bp)
Overview 1 RT 1: 2-1421 bp Neighborhood of RT #1 [2, 1420] PHA02517 RVT-GII Feature: gene Location: 2-502 bp Feature: domain Description: PHA02517 Location: 83-437 bp Feature: domain Description: PHA02517 Location: 83 -43 7 bp Feature: gene Location: 1094-1420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 67-1421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: LVOO01000068.1 Escherichia coli strain swine64 swine64_contig_80, whole genome shotgun sequence (38367 bp)
Overview 1 RT 1: 17232-20297 bp Neighborhood of RT #1 [17232, 20297] RVT-GII GIIM RVT-GII Feature: gene Location: 17232-17402 bp Feature: gene Location: 17540-17719 bp Feature: gene Location: 17818-18339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17824-18106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17824 -18106 bp Feature: domain Description: GIIM Note: maturase Location: 18154-18334 bp Feature: domain Description: GIIM Note: maturase Location: 18154 -18334 bp Feature: gene Location: 18367-18906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18697-18775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18697-18775 bp Feature: gene Location: 18937-19134 bp Feature: gene Location: 19392-20297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)