myRT

myRT report for GCA_001616385.1_ASM161638v1

Download annotations/find similar RTs

Seq: LVOT01000041.1 Escherichia coli strain swine70 swine70_contig_52, whole genome shotgun sequence (20446 bp)
Overview 1 RT 1: 16320-19656 bp Neighborhood of RT #1 [16320, 19883] SLATT_5 RVT-UG17 Peptidase_S74 Feature: gene Location: 16320-16460 bp Feature: gene Location: 16473-17024 bp Feature: domain Description: SLATT_5 Location: 16479-16995 bp Feature: domain Description: SLATT_5 Location: 1 6479-1 6995 bp Feature: gene Location: 17002-18372 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17230-17836 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 7230-1 7836 bp Feature: gene Location: 18453-18785 bp Feature: gene Location: 18810-19883 bp Feature: domain Description: Peptidase_S74 Location: 19509-19656 bp Feature: domain Description: Peptidase_S74 Location: 1 9509-1 9656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Peptidase_S74 (pfam13884)

Seq: LVOT01000057.1 Escherichia coli strain swine70 swine70_contig_73, whole genome shotgun sequence (47050 bp)
Overview 1 RT 1: 21805-25688 bp Neighborhood of RT #1 [21805, 25693] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21805-22521 bp Feature: domain Description: rph Location: 21808-22516 bp Feature: domain Description: rph Location: 2 1808-2 2 516 bp Feature: gene Location: 22573-23229 bp Feature: domain Description: pyrE Location: 22591-23224 bp Feature: domain Description: pyrE Location: 2 2 591-2 32 2 4 bp Feature: gene Location: 23527-24486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23662-24211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3662 -2 42 11 bp Feature: gene Location: 24532-25128 bp Feature: domain Description: slmA Location: 24538-25114 bp Feature: domain Description: slmA Location: 2 4538-2 5114 bp Feature: gene Location: 25235-25693 bp Feature: domain Description: dut Location: 25241-25688 bp Feature: domain Description: dut Location: 2 52 41-2 5688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)