myRT

myRT report for GCA_001616715.1_ASM161671v1

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Seq: LVPY01000034.1 Escherichia coli strain sheep29 sheep29_contig_37, whole genome shotgun sequence (30699 bp)
Overview 1 RT 1: 22406-25577 bp Neighborhood of RT #1 [22406, 25579] PRK10276 RVT-GII DDE_Tnp_IS1 Feature: gene Location: 22406-23089 bp Feature: domain Description: PRK10276 Location: 22709-23072 bp Feature: domain Description: PRK1 0276 Location: 22709-23072 bp Feature: gene Location: 23143-23745 bp Feature: gene Location: 23720-24730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23726-24338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23726-24338 bp Feature: gene Location: 24853-25065 bp Feature: gene Location: 25076-25579 bp Feature: domain Description: DDE_Tnp_IS1 Location: 25187-25577 bp Feature: domain Description: DDE_Tnp_IS1 Location: 251 87-25577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400)

Seq: LVPY01000049.1 Escherichia coli strain sheep29 sheep29_contig_54, whole genome shotgun sequence (108830 bp)
Overview 1 RT 1: 13272-17534 bp Neighborhood of RT #1 [13272, 17534] TIGR02646 COG3950 RVT-Retrons DinI Feature: gene Location: 13272-13832 bp Feature: domain Description: TIGR02646 Location: 13275-13623 bp Feature: domain Description: TIGR02 646 Location: 132 75-1362 3 bp Feature: gene Location: 13952-15586 bp Feature: domain Description: COG3950 Location: 14090-15548 bp Feature: domain Description: COG3950 Location: 14090-15548 bp Feature: gene Location: 15586-16521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15688-16282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15688-162 82 bp Feature: gene Location: 17000-17233 bp Feature: domain Description: DinI Location: 17042-17228 bp Feature: domain Description: DinI Location: 17042 -172 2 8 bp Feature: gene Location: 17244-17534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DinI (pfam06183)