myRT

myRT report for GCA_001616875.1_ASM161687v1

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Seq: LVQG01000088.1 Escherichia coli strain sheep37 sheep37_contig_112, whole genome shotgun sequence (249542 bp)
Overview 1 RT 1: 2-4398 bp Neighborhood of RT #1 [2, 4400] PHA02517 RVT-GII GIIM PHA02517 FimD Feature: gene Location: 2-148 bp Feature: domain Description: PHA02517 Location: 5-83 bp Feature: domain Description: PHA0251 7 Location: 5-83 bp Feature: gene Location: 740-2263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1013-1745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 3-1 745 bp Feature: domain Description: GIIM Note: maturase Location: 1820-2018 bp Feature: domain Description: GIIM Note: maturase Location: 1 820-201 8 bp Feature: gene Location: 2440-2826 bp Feature: domain Description: PHA02517 Location: 2443-2824 bp Feature: domain Description: PHA0251 7 Location: 2443-2824 bp Feature: gene Location: 3252-4400 bp Feature: domain Description: FimD Location: 3303-4398 bp Feature: domain Description: FimD Location: 3303-4398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), FimD (COG3188), RVT-GII, GIIM (pfam08388)

Seq: LVQG01000041.1 Escherichia coli strain sheep37 sheep37_contig_51, whole genome shotgun sequence (19707 bp)
Overview 1 RT 1: 13334-17045 bp Neighborhood of RT #1 [13334, 17045] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 13334-14365 bp Feature: domain Description: LacI Location: 13376-13511 bp Feature: domain Description: LacI Location: 13376-13511 bp Feature: domain Description: PBP1_GntR Location: 13550-14360 bp Feature: domain Description: PBP1_GntR Location: 13550-14360 bp Feature: gene Location: 14496-14714 bp Feature: gene Location: 14892-15743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14895-15303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14895-15303 bp Feature: domain Description: GIIM Note: maturase Location: 15351-15576 bp Feature: domain Description: GIIM Note: maturase Location: 15351-15576 bp Feature: gene Location: 15716-16150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15908-16124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15908-1612 4 bp Feature: gene Location: 16319-16516 bp Feature: gene Location: 16875-17045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)

Seq: LVQG01000053.1 Escherichia coli strain sheep37 sheep37_contig_66, whole genome shotgun sequence (35741 bp)
Overview 1 RT 1: 647-4377 bp Neighborhood of RT #1 [647, 4377] Inovirus_Gp2 RVT-GII Feature: gene Location: 647-964 bp Feature: gene Location: 1823-2386 bp Feature: domain Description: Inovirus_Gp2 Location: 1880-2321 bp Feature: domain Description: Inovirus_Gp2 Location: 1880-23 21 bp Feature: gene Location: 2712-3875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826-3513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2826-3 513 bp Feature: gene Location: 3862-4170 bp Feature: gene Location: 4204-4377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-GII