myRT

myRT report for GCA_001620905.1_ASM162090v1

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Seq: LVRF01000019.1 Escherichia coli strain GN04488 GCID_ECOLID_00186_NODE_115.ctg_1, whole genome shotgun sequence (16646 bp)
Overview 1 RT 1: 7417-11017 bp Neighborhood of RT #1 [7417, 11388] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7417-7636 bp Feature: gene Location: 7881-8432 bp Ori: KZH42425.1 Feature: domain Description: SLATT_5 Location: 7890-8403 bp Feature: domain Description: SLATT_5 Location: 7890-8403 bp Feature: gene Location: 8410-9780 bp Ori: KZH42426.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8638-9244 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 8638-9244 bp Feature: gene Location: 9893-10477 bp Ori: KZH42427.1 Feature: domain Description: Caudo_TAP Location: 10109-10466 bp Feature: domain Description: Caudo_TAP Location: 1 01 09-1 0466 bp Feature: gene Location: 10486-11388 bp Ori: KZH42428.1 Feature: domain Description: Macro_Appr_pase Location: 10504-11017 bp Feature: domain Description: Macro_Appr_pase Location: 1 0504-1 1 01 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: LVRF01000132.1 Escherichia coli strain GN04488 GCID_ECOLID_00186_NODE_217.ctg_1, whole genome shotgun sequence (2873 bp)
Overview 1 RT 1: 696-2628 bp Neighborhood of RT #1 [696, 2873] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 696-1100 bp Ori: KZH37339.1 Feature: domain Description: InsE Location: 726-1062 bp Feature: domain Description: InsE Location: 72 6-1062 bp Feature: gene Location: 1129-1518 bp Feature: domain Description: PHA02517 Location: 1132-1474 bp Feature: domain Description: PHA02 517 Location: 1132 -1474 bp Feature: gene Location: 1602-2873 bp Ori: KZH37340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 3-2 355 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2628 bp Feature: domain Description: GIIM Note: maturase Location: 2 430-2 62 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LVRF01000306.1 Escherichia coli strain GN04488 GCID_ECOLID_00186_NODE_50.ctg_1, whole genome shotgun sequence (33906 bp)
Overview 1 RT 1: 10011-16857 bp Neighborhood of RT #1 [10011, 16865] RVT-Retrons PRK11388 Feature: gene Location: 10011-10526 bp Feature: gene Location: 10523-11650 bp Feature: gene Location: 11897-13654 bp Ori: KZH33490.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12041-12659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12041-12659 bp Feature: gene Location: 14679-14909 bp Feature: gene Location: 14946-16865 bp Ori: KZH33492.1 Feature: domain Description: PRK11388 Location: 14949-16857 bp Feature: domain Description: PRK113 88 Location: 14949-16857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)