myRT

myRT report for GCA_001620915.1_ASM162091v1

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Seq: LVRE01000106.1 Escherichia coli strain GN04481 GCID_ECOLID_00185_NODE_194.ctg_1, whole genome shotgun sequence (4393 bp)
Overview 1 RT 1: 1-3186 bp Neighborhood of RT #1 [1, 3698] RVT-Retrons FRG Feature: gene Location: 1-381 bp Feature: gene Location: 660-953 bp Feature: gene Location: 1276-2225 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1456-1684 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 456-1 684 bp Feature: gene Location: 2334-3698 bp Ori: KZH34416.1 Feature: domain Description: FRG Location: 2901-3186 bp Feature: domain Description: FRG Location: 2901 -31 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901)

Seq: LVRE01000265.1 Escherichia coli strain GN04481 GCID_ECOLID_00185_NODE_5.ctg_1, whole genome shotgun sequence (88908 bp)
Overview 1 RT 1: 79942-86051 bp Neighborhood of RT #1 [79942, 86110] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase SfsB Feature: gene Location: 79942-80862 bp Ori: KZH29591.1 Feature: domain Description: AbiEii Location: 79984-80725 bp Feature: domain Description: AbiEii Location: 79984-8072 5 bp Feature: gene Location: 80849-81652 bp Ori: KZH29592.1 Feature: domain Description: AbiEi_3_N Location: 80882-81143 bp Feature: domain Description: AbiEi_3_N Location: 80882 -81143 bp Feature: domain Description: AbiEi_3 Location: 81155-81611 bp Feature: domain Description: AbiEi_3 Location: 81155-81611 bp Feature: gene Location: 81947-85156 bp Ori: KZH29593.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 82475-82964 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 82 475-82 964 bp Feature: domain Description: nitrilase Location: 84470-85067 bp Feature: domain Description: nitrilase Location: 84470-85067 bp Feature: gene Location: 85503-85973 bp Feature: gene Location: 85970-86110 bp Ori: KZH29595.1 Feature: domain Description: SfsB Location: 85979-86051 bp Feature: domain Description: SfsB Location: 85979-86051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), SfsB (COG3423)