myRT

myRT report for GCA_001621035.2_ASM162103v2

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Seq: LVRJ02000001.1 Escherichia coli strain GN04563 000000F_arrow, whole genome shotgun sequence (5095848 bp)
Overview 1 RT 1: 249340-255311 bp 2 RT 2: 3460868-3466587 bp Neighborhood of RT #1 [249340, 255430] PRK10597 SLATT_5 RVT-UG17 Caudo_TAP phage_tail_N 7tmA_amine_R-like Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Neighborhood of RT #2 [3460868, 3466587] RVT-Retrons Feature: gene Location: 249340-249588 bp Ori: RRO32778.1 Feature: domain Description: PRK10597 Location: 249343-249583 bp Feature: domain Description: PRK1 0597 Location: 249343-249583 bp Feature: gene Location: 249811-250362 bp Ori: RRO32779.1 Feature: domain Description: SLATT_5 Location: 249817-250333 bp Feature: domain Description: SLATT_5 Location: 24981 7-250333 bp Feature: gene Location: 250340-251710 bp Ori: RRO32780.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 250568-251174 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 250568-251 1 74 bp Feature: gene Location: 251823-252407 bp Ori: RRO32781.1 Feature: domain Description: Caudo_TAP Location: 252039-252396 bp Feature: domain Description: Caudo_TAP Location: 252039-252396 bp Feature: gene Location: 252407-255430 bp Ori: RRO32782.1 Feature: domain Description: phage_tail_N Location: 252410-252809 bp Feature: domain Description: phage_tail_N Location: 25241 0-252809 bp Feature: domain Description: 7tmA_amine_R-like Location: 253316-253733 bp Feature: domain Description: 7tmA_amine_R-like Location: 25331 6-253733 bp Feature: domain Description: Phage_fiber_2 Location: 253793-253913 bp Feature: domain Description: Phage_fiber_2 Location: 253793-25391 3 bp Feature: domain Description: Phage_fiber_2 Location: 253925-254045 bp Feature: domain Description: Phage_fiber_2 Location: 253925-254045 bp Feature: domain Description: Collar Location: 254801-254939 bp Feature: domain Description: Collar Location: 254801 -254939 bp Feature: domain Description: Phage_fiber Location: 254990-255029 bp Feature: domain Description: Phage_fiber Location: 254990-255029 bp Feature: domain Description: Phage_fiber Location: 255086-255125 bp Feature: domain Description: Phage_fiber Location: 255086-2551 25 bp Feature: domain Description: Phage_fiber Location: 255233-255272 bp Feature: domain Description: Phage_fiber Location: 255233-255272 bp Feature: domain Description: Phage_fiber Location: 255278-255311 bp Feature: domain Description: Phage_fiber Location: 255278-25531 1 bp Feature: gene Location: 3460868-3461766 bp Feature: gene Location: 3462201-3463328 bp Feature: gene Location: 3463575-3465332 bp Ori: RRO35624.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3463719-3464337 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 346371 9-3464337 bp Feature: gene Location: 3465903-3466142 bp Feature: gene Location: 3466357-3466587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), phage_tail_N (pfam08400), 7tmA_amine_R-like (cd14967), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), RVT-Retrons

Seq: LVRJ02000003.1 Escherichia coli strain GN04563 2_arrow, whole genome shotgun sequence (43818 bp)
Overview 1 RT 1: 10793-14746 bp Neighborhood of RT #1 [10793, 14746] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 10793-11026 bp Ori: RRO26689.1 Feature: domain Description: DUF905 Location: 10823-11021 bp Feature: domain Description: DUF905 Location: 1082 3-1102 1 bp Feature: gene Location: 11083-11568 bp Ori: RRO26690.1 Gene: ssb Feature: domain Description: PRK13732 Location: 11086-11566 bp Feature: domain Description: PRK13732 Location: 11086-11566 bp Feature: gene Location: 11718-13619 bp Ori: RRO26691.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11985-12816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11985-12 816 bp Feature: domain Description: Intron_maturas2 Location: 12930-13188 bp Feature: domain Description: Intron_maturas2 Location: 12 930-13188 bp Feature: domain Description: HNHc Note: nucleases Location: 13362-13524 bp Feature: domain Description: HNHc Note: nucleases Location: 13362 -1352 4 bp Feature: gene Location: 14336-14593 bp Feature: gene Location: 14561-14746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LVRJ02000002.1 Escherichia coli strain GN04563 1_arrow, whole genome shotgun sequence (74353 bp)
Overview 1 RT 1: 50309-54697 bp Neighborhood of RT #1 [50309, 54702] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 50309-50503 bp Feature: gene Location: 50484-50921 bp Feature: gene Location: 51875-53776 bp Ori: RRO26920.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52142-52973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52142-52973 bp Feature: domain Description: Intron_maturas2 Location: 53087-53345 bp Feature: domain Description: Intron_maturas2 Location: 53 087-53 3 45 bp Feature: domain Description: HNHc Note: nucleases Location: 53519-53681 bp Feature: domain Description: HNHc Note: nucleases Location: 53 519-53 681 bp Feature: gene Location: 53926-54411 bp Ori: RRO26921.1 Gene: ssb Feature: domain Description: PRK13732 Location: 53929-54409 bp Feature: domain Description: PRK13 73 2 Location: 53 929-54409 bp Feature: gene Location: 54469-54702 bp Ori: RRO26922.1 Feature: domain Description: DUF905 Location: 54499-54697 bp Feature: domain Description: DUF905 Location: 54499-54697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)