myRT

myRT report for GCA_001621145.1_ASM162114v1

Download annotations/find similar RTs

Seq: LVRO01000079.1 Escherichia coli strain GN04682 GCID_ECOLID_00198_NODE_17.ctg_1, whole genome shotgun sequence (88076 bp)
Overview 1 RT 1: 2796-8827 bp Neighborhood of RT #1 [2796, 8964] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 2796-2936 bp Ori: KZH60971.1 Feature: domain Description: SfsB Location: 2805-2877 bp Feature: domain Description: SfsB Location: 2805-2877 bp Feature: gene Location: 2933-3403 bp Feature: gene Location: 3750-6959 bp Ori: KZH60973.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4278-4767 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4278-4767 bp Feature: domain Description: nitrilase Location: 6273-6870 bp Feature: domain Description: nitrilase Location: 6273-6870 bp Feature: gene Location: 7254-8057 bp Ori: KZH60974.1 Feature: domain Description: AbiEi_3_N Location: 7287-7548 bp Feature: domain Description: AbiEi_3_N Location: 7287-7548 bp Feature: domain Description: AbiEi_3 Location: 7560-8016 bp Feature: domain Description: AbiEi_3 Location: 7560-801 6 bp Feature: gene Location: 8044-8964 bp Ori: KZH60975.1 Feature: domain Description: AbiEii Location: 8086-8827 bp Feature: domain Description: AbiEii Location: 8086-8827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: LVRO01000031.1 Escherichia coli strain GN04682 GCID_ECOLID_00198_NODE_126.ctg_1, whole genome shotgun sequence (4088 bp)
Overview 1 RT 1: 1-3187 bp Neighborhood of RT #1 [1, 3699] RVT-Retrons FRG Feature: gene Location: 1-381 bp Feature: gene Location: 660-953 bp Feature: gene Location: 1276-2226 bp Ori: KZH62021.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1456-1999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1456-1999 bp Feature: gene Location: 2335-3699 bp Ori: KZH62020.1 Feature: domain Description: FRG Location: 2902-3187 bp Feature: domain Description: FRG Location: 2 902 -3187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901)