myRT

myRT report for GCA_001621165.1_ASM162116v1

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Seq: LVRP01000134.1 Escherichia coli strain GN04729 GCID_ECOLID_00199_NODE_219.ctg_1, whole genome shotgun sequence (2639 bp)
Overview 1 RT 1: 1-2417 bp Neighborhood of RT #1 [1, 2431] YhhI YhhI RVT-GII GIIM YhhI Feature: gene Location: 1-378 bp Feature: domain Description: YhhI Location: 4-181 bp Feature: domain Description: YhhI Location: 4-1 81 bp Feature: domain Description: YhhI Location: 181-361 bp Feature: domain Description: YhhI Location: 1 81 -361 bp Feature: gene Location: 406-546 bp Feature: gene Location: 910-2160 bp Ori: KZI10938.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1114-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 4-1 771 bp Feature: domain Description: GIIM Note: maturase Location: 1852-2074 bp Feature: domain Description: GIIM Note: maturase Location: 1 852-2074 bp Feature: gene Location: 2207-2431 bp Ori: KZI10939.1 Feature: domain Description: YhhI Location: 2246-2417 bp Feature: domain Description: YhhI Location: 2246-241 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: LVRP01000002.1 Escherichia coli strain GN04729 GCID_ECOLID_00199_NODE_10.ctg_1, whole genome shotgun sequence (67848 bp)
Overview 1 RT 1: 128-7122 bp Neighborhood of RT #1 [128, 7157] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 128-622 bp Ori: KZI20522.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 272-446 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2 72 -446 bp Feature: gene Location: 1278-2378 bp Ori: KZI20523.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1461-1989 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1461-1989 bp Feature: gene Location: 2493-4739 bp Ori: KZI20524.1 Feature: domain Description: AAA_15 Location: 2496-3504 bp Feature: domain Description: AAA_15 Location: 2 496-3504 bp Feature: gene Location: 6138-7157 bp Ori: KZI20525.1 Feature: domain Description: DUF4917 Location: 6198-7122 bp Feature: domain Description: DUF4917 Location: 6198-712 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: LVRP01000390.1 Escherichia coli strain GN04729 GCID_ECOLID_00199_NODE_97.ctg_1, whole genome shotgun sequence (20593 bp)
Overview 1 RT 1: 1-2122 bp Neighborhood of RT #1 [1, 2122] RVT-GII GIIM Feature: gene Location: 1-1442 bp Ori: KZH94569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: domain Description: GIIM Note: maturase Location: 1066-1264 bp Feature: gene Location: 1411-1836 bp Feature: gene Location: 1751-2122 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LVRP01000379.1 Escherichia coli strain GN04729 GCID_ECOLID_00199_NODE_87.ctg_1, whole genome shotgun sequence (23160 bp)
Overview 1 RT 1: 14330-20724 bp Neighborhood of RT #1 [14330, 20747] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 14330-15247 bp Ori: KZH95707.1 Feature: domain Description: PFLE_PFLC Location: 14366-15221 bp Feature: domain Description: PFLE_PFLC Location: 14 366-15221 bp Feature: gene Location: 15384-16289 bp Feature: gene Location: 16775-17314 bp Ori: KZH95709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17105-17183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17105-17183 bp Feature: gene Location: 17342-17863 bp Ori: KZH95710.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17348-17630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1734 8-17630 bp Feature: domain Description: GIIM Note: maturase Location: 17678-17858 bp Feature: domain Description: GIIM Note: maturase Location: 17678-17858 bp Feature: gene Location: 18446-19675 bp Ori: KZH95714.1 Feature: domain Description: YesM Location: 18926-19667 bp Feature: domain Description: YesM Location: 18926-19667 bp Feature: gene Location: 19692-20747 bp Ori: KZH95711.1 Feature: domain Description: YesN Location: 19695-20085 bp Feature: domain Description: YesN Location: 19695-20085 bp Feature: domain Description: YesN Location: 20427-20724 bp Feature: domain Description: YesN Location: 204 27-20724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753)