myRT

myRT report for GCA_001621225.1_ASM162122v1

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Seq: LVRS01000096.1 Escherichia coli strain GN04772 GCID_ECOLID_00202_NODE_50.ctg_1, whole genome shotgun sequence (24967 bp)
Overview 1 RT 1: 22080-24260 bp Neighborhood of RT #1 [22080, 24913] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 22080-22466 bp Feature: gene Location: 22404-23441 bp Ori: KZH65817.1 Feature: domain Description: HTH_29 Location: 22500-22671 bp Feature: domain Description: HTH_29 Location: 22500-22671 bp Feature: domain Description: HTH_33 Location: 22704-22866 bp Feature: domain Description: HTH_33 Location: 22704-22866 bp Feature: domain Description: DDE_3 Location: 22908-23337 bp Feature: domain Description: DDE_3 Location: 22908-23337 bp Feature: gene Location: 23543-24913 bp Ori: KZH65818.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23804-24260 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23804-24260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: LVRS01000142.1 Escherichia coli strain GN04772 GCID_ECOLID_00202_NODE_92.ctg_1, whole genome shotgun sequence (2697 bp)
Overview 1 RT 1: 1-2697 bp Neighborhood of RT #1 [1, 2697] PHA02517 RVT-GII GIIM Feature: gene Location: 1-400 bp Feature: domain Description: PHA02517 Location: 4-400 bp Feature: domain Description: PHA02 517 Location: 4-400 bp Feature: gene Location: 484-1992 bp Ori: KZH63453.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 -1474 bp Feature: domain Description: GIIM Note: maturase Location: 1549-1747 bp Feature: domain Description: GIIM Note: maturase Location: 1549-1747 bp Feature: gene Location: 1961-2386 bp Feature: gene Location: 2599-2697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)