myRT

myRT report for GCA_001621265.1_ASM162126v1

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Seq: LVRU01000030.1 Escherichia coli strain GN04997 GCID_ECOLID_00205_NODE_27.ctg_1, whole genome shotgun sequence (64312 bp)
Overview 1 RT 1: 6185-13031 bp Neighborhood of RT #1 [6185, 13039] RVT-Retrons PRK11388 Feature: gene Location: 6185-6700 bp Feature: gene Location: 6697-7824 bp Feature: gene Location: 8071-9828 bp Ori: KZH89672.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8215-8833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 821 5-8833 bp Feature: gene Location: 10853-11083 bp Feature: gene Location: 11120-13039 bp Ori: KZH89674.1 Feature: domain Description: PRK11388 Location: 11123-13031 bp Feature: domain Description: PRK1 1 388 Location: 1 1 1 23-1 3031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)

Seq: LVRU01000054.1 Escherichia coli strain GN04997 GCID_ECOLID_00205_NODE_49.ctg_1, whole genome shotgun sequence (12751 bp)
Overview 1 RT 1: 10631-12582 bp Neighborhood of RT #1 [10631, 12582] PRK10173 PRK10173 RVT-GII Feature: gene Location: 10631-11080 bp Ori: KZH87387.1 Feature: domain Description: PRK10173 Location: 10634-11072 bp Feature: domain Description: PRK10173 Location: 10634-11072 bp Feature: gene Location: 11055-11375 bp Ori: KZH87388.1 Feature: domain Description: PRK10173 Location: 11058-11286 bp Feature: domain Description: PRK10173 Location: 11058-112 86 bp Feature: gene Location: 11414-11902 bp Ori: KZH87391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11672-11741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11672 -11741 bp Feature: gene Location: 11871-12296 bp Feature: gene Location: 12211-12582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: LVRU01000081.1 Escherichia coli strain GN04997 GCID_ECOLID_00205_NODE_73.ctg_1, whole genome shotgun sequence (3510 bp)
Overview 1 RT 1: 1-2140 bp Neighborhood of RT #1 [1, 2178] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-1272 bp Ori: KZH85881.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: gene Location: 1356-1745 bp Feature: domain Description: PHA02517 Location: 1359-1701 bp Feature: domain Description: PHA02517 Location: 13 59-1701 bp Feature: gene Location: 1774-2178 bp Ori: KZH85882.1 Feature: domain Description: InsE Location: 1804-2140 bp Feature: domain Description: InsE Location: 1804-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: LVRU01000019.1 Escherichia coli strain GN04997 GCID_ECOLID_00205_NODE_17.ctg_1, whole genome shotgun sequence (122003 bp)
Overview 1 RT 1: 10637-14831 bp Neighborhood of RT #1 [10637, 14831] RepL RVT-AbiP2 PRK10947 Feature: gene Location: 10637-10858 bp Feature: gene Location: 11509-12054 bp Ori: KZH91341.1 Feature: domain Description: RepL Location: 11632-12004 bp Feature: domain Description: RepL Location: 11632-12004 bp Feature: gene Location: 12410-13954 bp Ori: KZH91342.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 12839-13298 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 12839-13298 bp Feature: gene Location: 14151-14411 bp Ori: KZH91343.1 Feature: domain Description: PRK10947 Location: 14166-14388 bp Feature: domain Description: PRK1094 7 Location: 14 166-14 388 bp Feature: gene Location: 14481-14831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RepL (pfam05732), RVT-AbiP2, PRK10947 (DNA-binding transcriptional regulator H-NS)

Seq: LVRU01000039.1 Escherichia coli strain GN04997 GCID_ECOLID_00205_NODE_35.ctg_1, whole genome shotgun sequence (38451 bp)
Overview 1 RT 1: 5078-10048 bp Neighborhood of RT #1 [5078, 10048] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 5078-5293 bp Feature: gene Location: 5384-5665 bp Ori: KZH88479.1 Feature: domain Description: HTH_XRE Location: 5399-5564 bp Feature: domain Description: HTH_XRE Location: 5 399-5 5 64 bp Feature: gene Location: 5658-6758 bp Ori: KZH88480.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5799-6351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 799-635 1 bp Feature: gene Location: 6835-8337 bp Ori: KZH88481.1 Feature: domain Description: PRK13889 Location: 6841-7417 bp Feature: domain Description: PRK13889 Location: 6841-7417 bp Feature: gene Location: 9179-10048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)