myRT

myRT report for GCA_001621355.1_ASM162135v1

Download annotations/find similar RTs

Seq: LVRZ01000025.1 Escherichia coli strain GN05121 GCID_ECOLID_00210_NODE_120.ctg_1, whole genome shotgun sequence (7673 bp)
Overview 1 RT 1: 5999-7629 bp Neighborhood of RT #1 [5999, 7643] IS285 group_II_RT_mat RVT-GII InsE Feature: gene Location: 5999-6481 bp Ori: KZI03557.1 Feature: domain Description: IS285 Location: 6029-6407 bp Feature: domain Description: IS285 Location: 6029-6407 bp Feature: gene Location: 6620-6860 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6632-6845 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6632-6845 bp Feature: gene Location: 6829-7065 bp Ori: KZI03558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6832-7012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6832-701 2 bp Feature: gene Location: 7341-7643 bp Ori: KZI03559.1 Feature: domain Description: InsE Location: 7344-7629 bp Feature: domain Description: InsE Location: 7344-7629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), group_II_RT_mat (TIGR04416), RVT-GII, InsE (COG2963)

Seq: LVRZ01000024.1 Escherichia coli strain GN05121 GCID_ECOLID_00210_NODE_12.ctg_1, whole genome shotgun sequence (91309 bp)
Overview 1 RT 1: 47314-54168 bp Neighborhood of RT #1 [47314, 54168] PRK11388 RVT-Retrons Feature: gene Location: 47314-49233 bp Ori: KZI03616.1 Feature: domain Description: PRK11388 Location: 47317-49225 bp Feature: domain Description: PRK11388 Location: 47317-492 2 5 bp Feature: gene Location: 49270-49500 bp Feature: gene Location: 50525-52282 bp Ori: KZI03618.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50669-51287 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50669-512 87 bp Feature: gene Location: 52529-53656 bp Feature: gene Location: 53653-54168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons

Seq: LVRZ01000020.1 Escherichia coli strain GN05121 GCID_ECOLID_00210_NODE_116.ctg_1, whole genome shotgun sequence (8105 bp)
Overview 1 RT 1: 4317-7370 bp Neighborhood of RT #1 [4317, 7408] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 4317-4685 bp Feature: gene Location: 4600-5025 bp Feature: gene Location: 4994-6502 bp Ori: KZI03903.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5252-5984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5252-5984 bp Feature: domain Description: GIIM Note: maturase Location: 6059-6257 bp Feature: domain Description: GIIM Note: maturase Location: 6059-6257 bp Feature: gene Location: 6586-6975 bp Feature: domain Description: PHA02517 Location: 6589-6931 bp Feature: domain Description: PHA02517 Location: 6589-693 1 bp Feature: gene Location: 7004-7408 bp Ori: KZI03901.1 Feature: domain Description: InsE Location: 7034-7370 bp Feature: domain Description: InsE Location: 703 4-73 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: LVRZ01000005.1 Escherichia coli strain GN05121 GCID_ECOLID_00210_NODE_102.ctg_1, whole genome shotgun sequence (13261 bp)
Overview 1 RT 1: 8485-11267 bp Neighborhood of RT #1 [8485, 12616] GerD RVT-UG1 Feature: gene Location: 8485-8919 bp Ori: KZI04414.1 Feature: domain Description: GerD Location: 8563-8677 bp Feature: domain Description: GerD Location: 8563-8677 bp Feature: gene Location: 8928-9911 bp Feature: gene Location: 10145-12616 bp Ori: KZI04415.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 10757-11267 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 10757-11267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GerD (pfam17898), RVT-UG1