myRT

myRT report for GCA_001621435.1_ASM162143v1

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Seq: LVSD01000001.1 Escherichia coli strain GN05274 GCID_ECOLID_00215_NODE_1.ctg_1, whole genome shotgun sequence (174935 bp)
Overview 1 RT 1: 12038-18276 bp Neighborhood of RT #1 [12038, 18281] DinI DUF4145 RVT-Retrons Q P Feature: gene Location: 12038-12271 bp Ori: KZI37148.1 Feature: domain Description: DinI Location: 12080-12266 bp Feature: domain Description: DinI Location: 1 2080-1 2266 bp Feature: gene Location: 12400-13140 bp Ori: KZI37149.1 Feature: domain Description: DUF4145 Location: 12793-13054 bp Feature: domain Description: DUF41 45 Location: 1 2793-1 3054 bp Feature: gene Location: 13677-15434 bp Ori: KZI37150.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13821-14442 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3821 -1 4442 bp Feature: gene Location: 15484-16515 bp Ori: KZI37151.1 Feature: domain Description: Q Location: 15487-16510 bp Feature: domain Description: Q Location: 1 5487-1 651 0 bp Feature: gene Location: 16515-18281 bp Ori: KZI37152.1 Feature: domain Description: P Location: 16542-18276 bp Feature: domain Description: P Location: 1 6542-1 8276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), DUF4145 (pfam13643), RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: LVSD01000062.1 Escherichia coli strain GN05274 GCID_ECOLID_00215_NODE_154.ctg_1, whole genome shotgun sequence (3738 bp)
Overview 1 RT 1: 299-3139 bp Neighborhood of RT #1 [299, 3738] SLATT_5 RVT-UG17 bZIP_CREB1 phage_tail_N Feature: gene Location: 299-850 bp Ori: KZI32675.1 Feature: domain Description: SLATT_5 Location: 305-821 bp Feature: domain Description: SLATT_5 Location: 305-82 1 bp Feature: gene Location: 828-2198 bp Ori: KZI32676.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1056-1662 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1056-1662 bp Feature: gene Location: 2636-2923 bp Feature: domain Description: bZIP_CREB1 Location: 2834-2918 bp Feature: domain Description: bZIP_CREB1 Location: 2 834-2 918 bp Feature: gene Location: 2857-3738 bp Feature: domain Description: phage_tail_N Location: 2860-3139 bp Feature: domain Description: phage_tail_N Location: 2 860-3139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, bZIP_CREB1 (cd14690), phage_tail_N (pfam08400)

Seq: LVSD01000124.1 Escherichia coli strain GN05274 GCID_ECOLID_00215_NODE_24.ctg_1, whole genome shotgun sequence (54036 bp)
Overview 1 RT 1: 43588-47470 bp Neighborhood of RT #1 [43588, 47475] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 43588-44046 bp Ori: KZI29680.1 Feature: domain Description: dut Location: 43594-44041 bp Feature: domain Description: dut Location: 43 594-44041 bp Feature: gene Location: 44153-44749 bp Ori: KZI29681.1 Gene: slmA Feature: domain Description: slmA Location: 44159-44735 bp Feature: domain Description: slmA Location: 44159-4473 5 bp Feature: gene Location: 44795-45754 bp Ori: KZI29682.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44930-45479 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4493 0-45479 bp Feature: gene Location: 46052-46693 bp Ori: KZI29683.1 Gene: pyrE Feature: domain Description: pyrE Location: 46055-46688 bp Feature: domain Description: pyrE Location: 46055-46688 bp Feature: gene Location: 46759-47475 bp Ori: KZI29684.1 Gene: rph Feature: domain Description: rph Location: 46762-47470 bp Feature: domain Description: rph Location: 46762-47470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)