myRT

myRT report for GCA_001621585.1_ASM162158v1

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Seq: LVSL01000294.1 Escherichia coli strain GN05554 GCID_ECOLID_00223_NODE_68.ctg_1, whole genome shotgun sequence (27961 bp)
Overview 1 RT 1: 10554-18171 bp Neighborhood of RT #1 [10554, 18206] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 10554-10805 bp Feature: gene Location: 11177-11671 bp Ori: KZI69550.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 11321-11495 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 1 321 -1 1 495 bp Feature: gene Location: 12327-13427 bp Ori: KZI69551.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12510-13038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 251 0-1 3038 bp Feature: gene Location: 13542-15788 bp Ori: KZI69552.1 Feature: domain Description: AAA_15 Location: 13545-14553 bp Feature: domain Description: AAA_1 5 Location: 1 3545-1 4553 bp Feature: gene Location: 17187-18206 bp Ori: KZI69553.1 Feature: domain Description: DUF4917 Location: 17247-18171 bp Feature: domain Description: DUF491 7 Location: 1 7247-1 81 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: LVSL01000040.1 Escherichia coli strain GN05554 GCID_ECOLID_00223_NODE_134.ctg_1, whole genome shotgun sequence (13564 bp)
Overview 1 RT 1: 7422-13560 bp Neighborhood of RT #1 [7422, 13564] YesN YesN YesM RVT-GII GIIM RVT-GII IS5 Feature: gene Location: 7422-8477 bp Ori: KZI86218.1 Feature: domain Description: YesN Location: 7425-7815 bp Feature: domain Description: YesN Location: 742 5-7815 bp Feature: domain Description: YesN Location: 8157-8454 bp Feature: domain Description: YesN Location: 8157-8454 bp Feature: gene Location: 8494-9723 bp Ori: KZI86219.1 Feature: domain Description: YesM Location: 8974-9715 bp Feature: domain Description: YesM Location: 8974-9715 bp Feature: gene Location: 10306-10827 bp Ori: KZI86220.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10312-10594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10312 -10594 bp Feature: domain Description: GIIM Note: maturase Location: 10642-10822 bp Feature: domain Description: GIIM Note: maturase Location: 10642 -1082 2 bp Feature: gene Location: 10855-11394 bp Ori: KZI86221.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11185-11263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11185-112 63 bp Feature: gene Location: 11880-12785 bp Feature: gene Location: 12858-13564 bp Ori: KZI86223.1 Feature: domain Description: IS5 Location: 13047-13560 bp Feature: domain Description: IS5 Location: 13047-13560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: LVSL01000098.1 Escherichia coli strain GN05554 GCID_ECOLID_00223_NODE_187.ctg_1, whole genome shotgun sequence (8310 bp)
Overview 1 RT 1: 1-2682 bp Neighborhood of RT #1 [1, 2682] RVT-GII GIIM PHA02517 Feature: gene Location: 1-1272 bp Ori: KZI81993.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: domain Description: GIIM Note: maturase Location: 829-1027 bp Feature: gene Location: 1449-1835 bp Ori: KZI82003.1 Feature: domain Description: PHA02517 Location: 1452-1833 bp Feature: domain Description: PHA02517 Location: 1452-183 3 bp Feature: gene Location: 2527-2682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LVSL01000148.1 Escherichia coli strain GN05554 GCID_ECOLID_00223_NODE_231.ctg_1, whole genome shotgun sequence (3114 bp)
Overview 1 RT 1: 1-3114 bp Neighborhood of RT #1 [1, 3114] YhhI YhhI YhhI RVT-GII GIIM Feature: gene Location: 1-594 bp Ori: KZI78941.1 Feature: domain Description: YhhI Location: 4-367 bp Feature: domain Description: YhhI Location: 4 -367 bp Feature: domain Description: YhhI Location: 424-595 bp Feature: domain Description: YhhI Location: 4 24 -595 bp Feature: gene Location: 770-994 bp Ori: KZI78944.1 Feature: domain Description: YhhI Location: 809-980 bp Feature: domain Description: YhhI Location: 809-980 bp Feature: gene Location: 1041-2291 bp Ori: KZI78942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1245-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 5-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1983-2205 bp Feature: domain Description: GIIM Note: maturase Location: 1983-2205 bp Feature: gene Location: 2655-2795 bp Feature: gene Location: 2850-3114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)