myRT

myRT report for GCA_001621855.1_ASM162185v1

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Seq: LVSY01000203.1 Escherichia coli strain GN05918 GCID_ECOLID_00236_NODE_48.ctg_1, whole genome shotgun sequence (36864 bp)
Overview 1 RT 1: 28295-34857 bp Neighborhood of RT #1 [28295, 34865] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 28295-28570 bp Feature: domain Description: DUF5405 Location: 28313-28553 bp Feature: domain Description: DUF5405 Location: 2831 3-28553 bp Feature: gene Location: 28560-30830 bp Feature: domain Description: Phage_GPA Location: 28959-29946 bp Feature: domain Description: Phage_GPA Location: 28959-29946 bp Feature: gene Location: 31157-32146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31274-31835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 274-31 835 bp Feature: gene Location: 32148-33500 bp Feature: domain Description: ABC_ATPase Location: 32208-32931 bp Feature: domain Description: ABC_ATPase Location: 32208-32931 bp Feature: gene Location: 33831-34865 bp Feature: domain Description: Q Location: 33834-34857 bp Feature: domain Description: Q Location: 33834-34857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)

Seq: LVSY01000188.1 Escherichia coli strain GN05918 GCID_ECOLID_00236_NODE_38.ctg_1, whole genome shotgun sequence (42269 bp)
Overview 1 RT 1: 18374-25220 bp Neighborhood of RT #1 [18374, 25228] RVT-Retrons PRK11388 Feature: gene Location: 18374-18889 bp Feature: gene Location: 18886-20013 bp Feature: gene Location: 20260-22017 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20404-21022 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 0404-2 102 2 bp Feature: gene Location: 23042-23272 bp Feature: gene Location: 23309-25228 bp Feature: domain Description: PRK11388 Location: 23312-25220 bp Feature: domain Description: PRK11388 Location: 2 3312 -2 52 2 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)