myRT

myRT report for GCA_001621885.1_ASM162188v1

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Seq: LVSZ01000149.1 Escherichia coli strain GN05963 GCID_ECOLID_00237_NODE_27.ctg_1, whole genome shotgun sequence (55892 bp)
Overview 1 RT 1: 22079-27847 bp Neighborhood of RT #1 [22079, 27855] Relaxase ABC_ATPase RVT-Retrons PRK09692 PRK10870 Feature: gene Location: 22079-23539 bp Feature: domain Description: Relaxase Location: 22106-22838 bp Feature: domain Description: Relaxase Location: 221 06-22838 bp Feature: gene Location: 23644-25008 bp Feature: domain Description: ABC_ATPase Location: 23692-24400 bp Feature: domain Description: ABC_ATPase Location: 23692-24400 bp Feature: gene Location: 25005-25955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25152-25680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251 52-25680 bp Feature: gene Location: 26558-26896 bp Feature: domain Description: PRK09692 Location: 26567-26888 bp Feature: domain Description: PRK09692 Location: 26567-26888 bp Feature: gene Location: 27331-27855 bp Feature: domain Description: PRK10870 Location: 27394-27847 bp Feature: domain Description: PRK1 0870 Location: 27394-27847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), ABC_ATPase (pfam09818), RVT-Retrons, PRK09692 (Integrase; provisional), PRK10870 (transcriptional repressor MprA; Provisional)

Seq: LVSZ01000086.1 Escherichia coli strain GN05963 GCID_ECOLID_00237_NODE_176.ctg_1, whole genome shotgun sequence (1815 bp)
Overview 1 RT 1: 71-1570 bp Neighborhood of RT #1 [71, 1815] PHA02517 RVT-GII GIIM Feature: gene Location: 71-460 bp Feature: domain Description: PHA02517 Location: 74-416 bp Feature: domain Description: PHA02 517 Location: 74-416 bp Feature: gene Location: 544-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-12 97 bp Feature: domain Description: GIIM Note: maturase Location: 1372-1570 bp Feature: domain Description: GIIM Note: maturase Location: 1372 -1570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LVSZ01000104.1 Escherichia coli strain GN05963 GCID_ECOLID_00237_NODE_192.ctg_1, whole genome shotgun sequence (1157 bp)
Overview 1 RT 1: 1-994 bp Neighborhood of RT #1 [1, 994] RVT-GII Feature: gene Location: 1-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-3 13 bp Feature: gene Location: 283-708 bp Feature: gene Location: 623-994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII