myRT

myRT report for GCA_001622055.1_ASM162205v1

Download annotations/find similar RTs

Seq: LVTI01000073.1 Escherichia coli strain GN06136 GCID_ECOLID_00246_NODE_164.ctg_1, whole genome shotgun sequence (10859 bp)
Overview 1 RT 1: 1-2792 bp Neighborhood of RT #1 [1, 2792] RVT-GII GIIM PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 278-703 bp Feature: gene Location: 672-2180 bp Ori: KZJ95742.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2357-2743 bp Ori: KZJ95743.1 Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA0251 7 Location: 2360-2741 bp Feature: gene Location: 2709-2792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LVTI01000402.1 Escherichia coli strain GN06136 GCID_ECOLID_00246_NODE_82.ctg_1, whole genome shotgun sequence (24077 bp)
Overview 1 RT 1: 3282-9313 bp Neighborhood of RT #1 [3282, 9450] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 3282-3422 bp Ori: KZJ84638.1 Feature: domain Description: SfsB Location: 3291-3363 bp Feature: domain Description: SfsB Location: 32 91-3363 bp Feature: gene Location: 3419-3889 bp Feature: gene Location: 4236-7445 bp Ori: KZJ84640.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4764-5253 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4764-52 53 bp Feature: domain Description: nitrilase Location: 6759-7356 bp Feature: domain Description: nitrilase Location: 6759-7356 bp Feature: gene Location: 7740-8543 bp Ori: KZJ84641.1 Feature: domain Description: AbiEi_3_N Location: 7773-8034 bp Feature: domain Description: AbiEi_3_N Location: 7773-8034 bp Feature: domain Description: AbiEi_3 Location: 8046-8502 bp Feature: domain Description: AbiEi_3 Location: 8046-8502 bp Feature: gene Location: 8530-9450 bp Ori: KZJ84642.1 Feature: domain Description: AbiEii Location: 8572-9313 bp Feature: domain Description: AbiEii Location: 8572 -9313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: LVTI01000131.1 Escherichia coli strain GN06136 GCID_ECOLID_00246_NODE_216.ctg_1, whole genome shotgun sequence (4293 bp)
Overview 1 RT 1: 1-3187 bp Neighborhood of RT #1 [1, 3699] RVT-Retrons FRG Feature: gene Location: 1-381 bp Feature: gene Location: 660-953 bp Feature: gene Location: 1276-2226 bp Ori: KZJ93753.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1456-1999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1456-1999 bp Feature: gene Location: 2335-3699 bp Ori: KZJ93752.1 Feature: domain Description: FRG Location: 2902-3187 bp Feature: domain Description: FRG Location: 2902-3 187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901)

Seq: LVTI01000042.1 Escherichia coli strain GN06136 GCID_ECOLID_00246_NODE_136.ctg_1, whole genome shotgun sequence (14397 bp)
Overview 1 RT 1: 4562-10953 bp Neighborhood of RT #1 [4562, 10979] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 4562-5617 bp Ori: KZJ96857.1 Feature: domain Description: YesN Location: 4565-4964 bp Feature: domain Description: YesN Location: 4 565-4 964 bp Feature: domain Description: YesN Location: 5297-5594 bp Feature: domain Description: YesN Location: 5297-5594 bp Feature: gene Location: 5634-6863 bp Ori: KZJ96858.1 Feature: domain Description: YesM Location: 6114-6855 bp Feature: domain Description: YesM Location: 6114 -6855 bp Feature: gene Location: 7446-7967 bp Ori: KZJ96859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7452-7734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 52-7734 bp Feature: domain Description: GIIM Note: maturase Location: 7782-7962 bp Feature: domain Description: GIIM Note: maturase Location: 7782-7962 bp Feature: gene Location: 7995-8534 bp Ori: KZJ96860.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8325-8403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8325-84 03 bp Feature: gene Location: 9020-9925 bp Feature: gene Location: 10062-10979 bp Ori: KZJ96862.1 Feature: domain Description: PFLE_PFLC Location: 10098-10953 bp Feature: domain Description: PFLE_PFLC Location: 10098-10953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)