myRT

myRT report for GCA_001623065.1_ASM162306v1

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Seq: LMCG01000027.1 Pseudovibrio sp. Ad46 AD46_contig000028, whole genome shotgun sequence (257376 bp)
Overview 1 RT 1: 252200-256388 bp Neighborhood of RT #1 [252200, 256388] PinE RVT-Retrons Feature: gene Location: 252200-253024 bp Feature: gene Location: 253211-253762 bp Ori: KZK94031.1 Gene: hin_1 Feature: domain Description: PinE Location: 253214-253754 bp Feature: domain Description: PinE Location: 25321 4-253754 bp Feature: gene Location: 253919-255058 bp Ori: KZK94032.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 254138-254675 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2541 38-254675 bp Feature: gene Location: 255206-255574 bp Feature: gene Location: 255576-256388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-Retrons

Seq: LMCG01000046.1 Pseudovibrio sp. Ad46 AD46_contig000047, whole genome shotgun sequence (386327 bp)
Overview 1 RT 1: 205031-212055 bp Neighborhood of RT #1 [205031, 212138] RVT-G2L4 RNase_HI_prokaryote_like PRK11534 PRK15245 Feature: gene Location: 205031-205135 bp Feature: gene Location: 205818-206189 bp Feature: gene Location: 206560-208290 bp Ori: KZK88525.1 Gene: rnhA_2 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 206776-207361 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 2 06776-2 07361 bp Feature: domain Description: RNase_HI_prokaryote_like Location: 207871-208252 bp Feature: domain Description: RNase_HI_prokaryote_like Location: 2 07871-2 082 52 bp Feature: gene Location: 208664-209767 bp Feature: gene Location: 210528-212138 bp Ori: KZK88527.1 Gene: spvC_1 Feature: domain Description: PRK11534 Location: 210855-211053 bp Feature: domain Description: PRK11534 Location: 2 10855-2 11053 bp Feature: domain Description: PRK15245 Location: 211545-212055 bp Feature: domain Description: PRK152 45 Location: 2 11545-2 12 055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, RNase_HI_prokaryote_like (cd09278), PRK11534 (DNA-binding transcriptional regulator CsiR; Provisional), PRK15245 (type III secretion system effector phosphothreonine lyase)

Seq: LMCG01000004.1 Pseudovibrio sp. Ad46 AD46_contig000004, whole genome shotgun sequence (119717 bp)
Overview 1 RT 1: 421-3184 bp Neighborhood of RT #1 [421, 3184] RVT-Retrons Feature: gene Location: 421-1377 bp Ori: KZK95863.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 544-1126 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 544-1126 bp Feature: gene Location: 1353-2294 bp Feature: gene Location: 2858-3184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons