myRT

myRT report for GCA_001623095.1_ASM162309v1

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Seq: LMCH01000063.1 Pseudovibrio sp. Ad5 AD5_contig000063, whole genome shotgun sequence (387443 bp)
Overview 1 RT 1: 36372-43084 bp Neighborhood of RT #1 [36372, 43084] PRK11534 PRK15245 RVT-G2L4 RNase_HI_prokaryote_like Feature: gene Location: 36372-37982 bp Ori: KZK90910.1 Gene: spvC_2 Feature: domain Description: PRK11534 Location: 36699-36897 bp Feature: domain Description: PRK1 1 534 Location: 36699-36897 bp Feature: domain Description: PRK15245 Location: 37377-37899 bp Feature: domain Description: PRK1 5245 Location: 37377-37899 bp Feature: gene Location: 38743-39846 bp Feature: gene Location: 40218-41948 bp Ori: KZK90912.1 Gene: rnhA_1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 40434-41019 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 40434-41 01 9 bp Feature: domain Description: RNase_HI_prokaryote_like Location: 41529-41910 bp Feature: domain Description: RNase_HI_prokaryote_like Location: 41 529-41 91 0 bp Feature: gene Location: 42153-42386 bp Feature: gene Location: 42713-43084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11534 (DNA-binding transcriptional regulator CsiR; Provisional), PRK15245 (type III secretion system effector phosphothreonine lyase), RVT-G2L4, RNase_HI_prokaryote_like (cd09278)

Seq: LMCH01000002.1 Pseudovibrio sp. Ad5 AD5_contig000002, whole genome shotgun sequence (143780 bp)
Overview 1 RT 1: 82377-85541 bp Neighborhood of RT #1 [82377, 85549] RVT-Retrons SR_ResInv PinE Feature: gene Location: 82377-83189 bp Feature: gene Location: 83191-83559 bp Feature: gene Location: 83707-84846 bp Ori: KZL01974.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83926-84463 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8392 6-84463 bp Feature: gene Location: 85003-85266 bp Ori: KZL01975.1 Gene: bin3 Feature: domain Description: SR_ResInv Location: 85015-85204 bp Feature: domain Description: SR_ResInv Location: 85015-852 04 bp Feature: gene Location: 85232-85549 bp Ori: KZL01976.1 Gene: hin_1 Feature: domain Description: PinE Location: 85235-85541 bp Feature: domain Description: PinE Location: 852 35-85541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SR_ResInv (cd03768), PinE (COG1961)

Seq: LMCH01000057.1 Pseudovibrio sp. Ad5 AD5_contig000057, whole genome shotgun sequence (334789 bp)
Overview 1 RT 1: 74549-80724 bp Neighborhood of RT #1 [74549, 80724] DEXQc_UvrD DEXQc_UvrD Viral_helicase1 AAA_15 AAA_15 TOPRIM_OLD RVT-Retrons Feature: gene Location: 74549-76075 bp Ori: KZK93366.1 Feature: domain Description: DEXQc_UvrD Location: 74579-74816 bp Feature: domain Description: DEXQc_UvrD Location: 74579-74816 bp Feature: domain Description: DEXQc_UvrD Location: 74882-75035 bp Feature: domain Description: DEXQc_UvrD Location: 74882-7503 5 bp Feature: domain Description: Viral_helicase1 Location: 75827-76040 bp Feature: domain Description: Viral_helicase1 Location: 75827-76040 bp Feature: gene Location: 76078-77796 bp Ori: KZK93367.1 Gene: recF_1 Feature: domain Description: AAA_15 Location: 76096-76312 bp Feature: domain Description: AAA_15 Location: 76096-763 12 bp Feature: domain Description: AAA_15 Location: 76636-77026 bp Feature: domain Description: AAA_15 Location: 7663 6-77026 bp Feature: domain Description: TOPRIM_OLD Location: 77164-77401 bp Feature: domain Description: TOPRIM_OLD Location: 77164-77401 bp Feature: gene Location: 78147-79283 bp Ori: KZK93368.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78417-79020 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78417-79020 bp Feature: gene Location: 79280-79447 bp Feature: gene Location: 79444-80724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXQc_UvrD (cd17932), Viral_helicase1 (pfam01443), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons