myRT

myRT report for GCA_001623875.1_ASM162387v1

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Seq: LWAE01000003.1 Clostridium magnum DSM 2767 CLMAG_contig000003, whole genome shotgun sequence (740872 bp)
Overview 1 RT 1: 283315-288795 bp Neighborhood of RT #1 [283315, 288836] SIR2-like RVT-GII Glyoxalase_2 TIGR02271 Feature: gene Location: 283315-284163 bp Feature: domain Description: SIR2-like Location: 283366-284032 bp Feature: domain Description: SIR2-like Location: 283366-284032 bp Feature: gene Location: 284416-284526 bp Feature: gene Location: 284644-286575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284962-285667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284962-285667 bp Feature: gene Location: 287480-287956 bp Feature: domain Description: Glyoxalase_2 Location: 287489-287843 bp Feature: domain Description: Glyoxalase_2 Location: 287489-287843 bp Feature: gene Location: 288369-288836 bp Feature: domain Description: TIGR02271 Location: 288456-288795 bp Feature: domain Description: TIGR02271 Location: 288456-288795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2-like (cd01406), RVT-GII, Glyoxalase_2 (pfam12681), TIGR02271 (conserved domain)

Seq: LWAE01000013.1 Clostridium magnum DSM 2767 CLMAG_contig000013, whole genome shotgun sequence (98012 bp)
Overview 1 RT 1: 46914-51586 bp 2 RT 2: 63790-68851 bp Neighborhood of RT #1 [46914, 51586] RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [63790, 68851] spoT_relA COG4712 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 46914-47114 bp Feature: gene Location: 47199-47783 bp Feature: gene Location: 48797-50602 bp Feature: RT Description: RVT_N Location: 48863-49109 bp Feature: RT Description: RVT_N Location: 48863-49109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49163-49829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49163-4982 9 bp Feature: domain Description: GIIM Note: maturase Location: 49901-50135 bp Feature: domain Description: GIIM Note: maturase Location: 49901-50135 bp Feature: domain Description: HNHc Note: nucleases Location: 50336-50507 bp Feature: domain Description: HNHc Note: nucleases Location: 50336-50507 bp Feature: gene Location: 50784-50939 bp Feature: gene Location: 50981-51586 bp Feature: gene Location: 63790-64374 bp Feature: domain Description: spoT_relA Location: 63805-64045 bp Feature: domain Description: spoT_relA Location: 63805-64045 bp Feature: gene Location: 64971-65333 bp Feature: domain Description: COG4712 Location: 64998-65310 bp Feature: domain Description: COG4712 Location: 64998-65310 bp Feature: gene Location: 65917-67722 bp Feature: RT Description: RVT_N Location: 65983-66229 bp Feature: RT Description: RVT_N Location: 65983-662 2 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66283-66949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662 83-66949 bp Feature: domain Description: GIIM Note: maturase Location: 67021-67255 bp Feature: domain Description: GIIM Note: maturase Location: 6702 1-672 55 bp Feature: domain Description: HNHc Note: nucleases Location: 67456-67627 bp Feature: domain Description: HNHc Note: nucleases Location: 67456-6762 7 bp Feature: gene Location: 67929-68324 bp Feature: gene Location: 68426-68851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), spoT_relA (TIGR00691), COG4712 (Uncharacterized protein )

Seq: LWAE01000017.1 Clostridium magnum DSM 2767 CLMAG_contig000017, whole genome shotgun sequence (60645 bp)
Overview 1 RT 1: 40122-48926 bp Neighborhood of RT #1 [40122, 48994] InsQ RVT-GII RVT-GII Intron_maturas2 HNHc RVT-GII HNHc InsQ PRK03103 Feature: gene Location: 40122-40463 bp Feature: gene Location: 41244-42098 bp Feature: domain Description: InsQ Location: 41253-42072 bp Feature: domain Description: InsQ Location: 41253 -42072 bp Feature: gene Location: 42798-43364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43119-43353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 119-43 3 53 bp Feature: gene Location: 43976-45778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44243-45035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44243 -4503 5 bp Feature: domain Description: Intron_maturas2 Location: 45125-45497 bp Feature: domain Description: Intron_maturas2 Location: 45125-45497 bp Feature: domain Description: HNHc Note: nucleases Location: 45578-45752 bp Feature: domain Description: HNHc Note: nucleases Location: 45578-45752 bp Feature: gene Location: 45935-47158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45944-46358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45944-463 58 bp Feature: domain Description: HNHc Note: nucleases Location: 46898-47048 bp Feature: domain Description: HNHc Note: nucleases Location: 46898-47048 bp Feature: gene Location: 47302-47574 bp Feature: domain Description: InsQ Location: 47311-47557 bp Feature: domain Description: InsQ Location: 473 11-47557 bp Feature: gene Location: 47744-48994 bp Feature: domain Description: PRK03103 Location: 47753-48926 bp Feature: domain Description: PRK03 103 Location: 47753 -48926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK03103 (DNA polymerase IV; Reviewed)