myRT

myRT report for GCA_001625595.1_NCIMB1942_1.0

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Seq: AUXT01000164.1 Pseudoalteromonas luteoviolacea NCIMB 1942 contig_42, whole genome shotgun sequence (46263 bp)
Overview 1 RT 1: 41358-46145 bp Neighborhood of RT #1 [41358, 46145] Csy3_I-F Cas6_I-F RVT-UG16 Feature: gene Location: 41358-42380 bp Ori: KZN46711.1 Feature: domain Description: Csy3_I-F Location: 41367-42366 bp Feature: domain Description: Csy3_I-F Location: 41 367-42366 bp Feature: gene Location: 42377-42967 bp Ori: KZN46712.1 Feature: domain Description: Cas6_I-F Location: 42386-42956 bp Feature: domain Description: Cas6_I-F Location: 42386-42956 bp Feature: gene Location: 43558-45039 bp Ori: KZN46713.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 43930-44329 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 43930-44329 bp Feature: gene Location: 45072-46145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csy3_I-F (cl09832), Cas6_I-F (cl09835), RVT-UG16

Seq: AUXT01000002.1 Pseudoalteromonas luteoviolacea NCIMB 1942 contig_10, whole genome shotgun sequence (15111 bp)
Overview 1 RT 1: 7750-13867 bp Neighborhood of RT #1 [7750, 13867] groES groEL RVT_N RVT-GII GIIM HNH Feature: gene Location: 7750-8037 bp Ori: KZN58784.1 Gene: groES Feature: domain Description: groES Location: 7753-8032 bp Feature: domain Description: groES Location: 7753-8032 bp Feature: gene Location: 8099-9748 bp Ori: KZN58785.1 Gene: groEL Feature: domain Description: groEL Location: 8105-9728 bp Feature: domain Description: groEL Location: 8105-972 8 bp Feature: gene Location: 10822-12486 bp Ori: KZN58786.1 Feature: domain Description: RVT_N Location: 10879-11110 bp Feature: domain Description: RVT_N Location: 10879-11110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11167-11812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11167-11812 bp Feature: domain Description: GIIM Note: maturase Location: 11866-12097 bp Feature: domain Description: GIIM Note: maturase Location: 11866-12 097 bp Feature: domain Description: HNH Note: nucleases Location: 12337-12475 bp Feature: domain Description: HNH Note: nucleases Location: 12 337-12 475 bp Feature: gene Location: 12605-12826 bp Feature: gene Location: 13238-13867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)