myRT

myRT report for GCA_001630825.1_ASM163082v1

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Seq: JUDW01000009.1 Escherichia coli strain RCE02 contig00009, whole genome shotgun sequence (183984 bp)
Overview 1 RT 1: 130729-134610 bp Neighborhood of RT #1 [130729, 134615] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 130729-131445 bp Ori: KZO66975.1 Gene: rph Feature: domain Description: rph Location: 130732-131440 bp Feature: domain Description: rph Location: 1 30732-1 31 440 bp Feature: gene Location: 131511-132152 bp Ori: KZO66976.1 Gene: pyrE Feature: domain Description: pyrE Location: 131514-132147 bp Feature: domain Description: pyrE Location: 1 31 51 4-1 321 47 bp Feature: gene Location: 132450-133409 bp Ori: KZO66977.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132585-133134 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 32585-1 331 34 bp Feature: gene Location: 133454-134050 bp Ori: KZO66978.1 Gene: slmA Feature: domain Description: slmA Location: 133460-134036 bp Feature: domain Description: slmA Location: 1 33460-1 34036 bp Feature: gene Location: 134157-134615 bp Ori: KZO66979.1 Feature: domain Description: dut Location: 134163-134610 bp Feature: domain Description: dut Location: 1 341 63-1 3461 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JUDW01000034.1 Escherichia coli strain RCE02 contig00034, whole genome shotgun sequence (34412 bp)
Overview 1 RT 1: 7194-11554 bp Neighborhood of RT #1 [7194, 11556] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 7194-8294 bp Ori: KZO64905.1 Feature: domain Description: D Location: 7206-8283 bp Feature: domain Description: D Location: 72 06-82 83 bp Feature: gene Location: 8385-8603 bp Ori: KZO64906.1 Feature: domain Description: PRK09678 Location: 8388-8586 bp Feature: domain Description: PRK09678 Location: 8388-8586 bp Feature: gene Location: 9007-9780 bp Ori: KZO64907.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 9142-9595 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 9142 -9595 bp Feature: gene Location: 10466-10948 bp Ori: KZO64908.1 Gene: smpB Feature: domain Description: SmpB Location: 10496-10943 bp Feature: domain Description: SmpB Location: 10496-10943 bp Feature: gene Location: 11080-11556 bp Ori: KZO64909.1 Feature: domain Description: PRK10724 Location: 11086-11554 bp Feature: domain Description: PRK1072 4 Location: 11086-11554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: JUDW01000059.1 Escherichia coli strain RCE02 contig00059, whole genome shotgun sequence (2669 bp)
Overview 1 RT 1: 155-1961 bp Neighborhood of RT #1 [155, 2056] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 155-2056 bp Ori: KZO64509.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1253 bp Feature: domain Description: Intron_maturas2 Location: 1367-1625 bp Feature: domain Description: Intron_maturas2 Location: 13 67-1625 bp Feature: domain Description: HNHc Note: nucleases Location: 1799-1961 bp Feature: domain Description: HNHc Note: nucleases Location: 1799-1961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)