myRT

myRT report for GCA_001633025.1_ASM163302v1

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Seq: LWMH01000001.1 Paenibacillus glucanolyticus strain SLM1 unitig_1, whole genome shotgun sequence (5160474 bp)
Overview 1 RT 1: 73577-79698 bp 2 RT 2: 371410-384825 bp 3 RT 3: 3242335-3251133 bp 4 RT 4: 4316250-4322416 bp 5 RT 5: 4669739-4676144 bp Neighborhood of RT #1 [73577, 79853] Dcm SLATT_5 RVT-UG17 DUF772 DDE_Tnp_1 DDE_Tnp_1 PKc Neighborhood of RT #2 [371410, 384854] RVT-GII HNHc SLH SLH RVT-GII GGDEF Neighborhood of RT #3 [3242335, 3251162] SLH SLH SLH Big_2 RVT-GII ATPgrasp_YheCD Neighborhood of RT #4 [4316250, 4322436] RVT-GII HNHc Uup Neighborhood of RT #5 [4669739, 4676152] PurR RNA_ligase RVT-GII HNHc COG1233 SigX4 Feature: gene Location: 73577-73903 bp Ori: KZS48960.1 Feature: domain Description: Dcm Location: 73619-73877 bp Feature: domain Description: Dcm Location: 7361 9-73877 bp Feature: gene Location: 74547-75152 bp Ori: KZS44803.1 Feature: domain Description: SLATT_5 Location: 74586-75132 bp Feature: domain Description: SLATT_5 Location: 74586-751 32 bp Feature: gene Location: 75168-76412 bp Ori: KZS44804.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 75291-75882 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 75291 -75882 bp Feature: gene Location: 76485-77678 bp Ori: KZS44805.1 Feature: domain Description: DUF772 Location: 76650-76845 bp Feature: domain Description: DUF772 Location: 76650-76845 bp Feature: domain Description: DDE_Tnp_1 Location: 76887-77235 bp Feature: domain Description: DDE_Tnp_1 Location: 76887-77235 bp Feature: domain Description: DDE_Tnp_1 Location: 77481-77631 bp Feature: domain Description: DDE_Tnp_1 Location: 77481 -77631 bp Feature: gene Location: 78636-79853 bp Ori: KZS44806.1 Feature: domain Description: PKc Location: 79128-79698 bp Feature: domain Description: PKc Location: 791 28-79698 bp Feature: gene Location: 371410-371796 bp Feature: gene Location: 371817-372374 bp Feature: gene Location: 373071-374876 bp Ori: KZS45067.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373362-374061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373362-374061 bp Feature: domain Description: HNHc Note: nucleases Location: 374604-374742 bp Feature: domain Description: HNHc Note: nucleases Location: 374604-374742 bp Feature: gene Location: 374961-375974 bp Feature: gene Location: 376059-377417 bp Ori: KZS45068.1 Feature: domain Description: SLH Location: 376251-376377 bp Feature: domain Description: SLH Location: 376251 -376377 bp Feature: domain Description: SLH Location: 376587-376677 bp Feature: domain Description: SLH Location: 376587-376677 bp Feature: gene Location: 377433-380198 bp Feature: gene Location: 380873-382666 bp Ori: KZS48981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381167-381863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 1 67-381 863 bp Feature: gene Location: 382795-383583 bp Feature: gene Location: 383769-384854 bp Ori: KZS45071.1 Feature: domain Description: GGDEF Location: 384390-384825 bp Feature: domain Description: GGDEF Location: 384390-384825 bp Feature: gene Location: 3242335-3243537 bp Ori: KZS47384.1 Feature: domain Description: SLH Location: 3242473-3242599 bp Feature: domain Description: SLH Location: 3242473-3242599 bp Feature: domain Description: SLH Location: 3242647-3242755 bp Feature: domain Description: SLH Location: 3242647-3242755 bp Feature: domain Description: SLH Location: 3242785-3242899 bp Feature: domain Description: SLH Location: 3242785-3242899 bp Feature: gene Location: 3244364-3246436 bp Feature: domain Description: Big_2 Location: 3244553-3244754 bp Feature: domain Description: Big_2 Location: 3244553-3244754 bp Feature: gene Location: 3247141-3248934 bp Ori: KZS49110.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3247435-3248131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3247435-32481 31 bp Feature: gene Location: 3249063-3249830 bp Feature: gene Location: 3250062-3251162 bp Ori: KZS47386.1 Feature: domain Description: ATPgrasp_YheCD Location: 3250362-3251133 bp Feature: domain Description: ATPgrasp_YheCD Location: 3250362-3251 1 33 bp Feature: gene Location: 4316250-4316624 bp Feature: gene Location: 4316630-4317187 bp Feature: gene Location: 4317884-4319689 bp Ori: KZS48305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4318175-4318874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 81 75-431 8874 bp Feature: domain Description: HNHc Note: nucleases Location: 4319417-4319555 bp Feature: domain Description: HNHc Note: nucleases Location: 431 941 7-431 9555 bp Feature: gene Location: 4319711-4320760 bp Feature: gene Location: 4320883-4322436 bp Ori: KZS48307.1 Feature: domain Description: Uup Location: 4320886-4322416 bp Feature: domain Description: Uup Location: 4320886-432241 6 bp Feature: gene Location: 4669739-4670866 bp Ori: KZS48574.1 Feature: domain Description: PurR Location: 4669868-4670837 bp Feature: domain Description: PurR Location: 4669868-4670837 bp Feature: gene Location: 4670935-4671162 bp Ori: KZS48575.1 Feature: domain Description: RNA_ligase Location: 4670950-4671145 bp Feature: domain Description: RNA_ligase Location: 4670950-4671 1 45 bp Feature: gene Location: 4671859-4673664 bp Ori: KZS48576.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4672150-4672849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46721 50-4672849 bp Feature: domain Description: HNHc Note: nucleases Location: 4673392-4673530 bp Feature: domain Description: HNHc Note: nucleases Location: 4673392-4673530 bp Feature: gene Location: 4673974-4675314 bp Ori: KZS48577.1 Feature: domain Description: COG1233 Location: 4673992-4675246 bp Feature: domain Description: COG1 233 Location: 4673992-4675246 bp Feature: gene Location: 4675340-4676152 bp Ori: KZS48578.1 Feature: domain Description: SigX4 Location: 4675343-4676144 bp Feature: domain Description: SigX4 Location: 4675343-46761 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), SLATT_5 (pfam18160), RVT-UG17, DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), PKc (cd00180), RVT-GII, HNHc (smart00507), SLH (pfam00395), GGDEF (TIGR00254)
Big_2 (pfam02368), ATPgrasp_YheCD (pfam14398), Uup (COG0488), PurR (COG1609), RNA_ligase (pfam09414), COG1233 (Phytoene dehydrogenase-related protein ), SigX4 (TIGR02957)