myRT

myRT report for GCA_001633565.1_ASM163356v1

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Seq: LUWY01000071.1 Lactobacillus plantarum strain Nizo2801 NODE_11, whole genome shotgun sequence (118155 bp)
Overview 1 RT 1: 613-3832 bp Neighborhood of RT #1 [613, 3843] RVT-GII GIIM fumC Feature: gene Location: 613-756 bp Feature: gene Location: 1047-1613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1071-1545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 071 -1 545 bp Feature: gene Location: 1651-1986 bp Feature: domain Description: GIIM Note: maturase Location: 1657-1813 bp Feature: domain Description: GIIM Note: maturase Location: 1 657-1 81 3 bp Feature: gene Location: 2461-3843 bp Feature: domain Description: fumC Location: 2464-3832 bp Feature: domain Description: fumC Location: 2464-3832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), fumC (PRK00485)

Seq: LUWY01000044.1 Lactobacillus plantarum strain Nizo2801 NODE_24, whole genome shotgun sequence (41930 bp)
Overview 1 RT 1: 17941-23022 bp Neighborhood of RT #1 [17941, 23030] COG4333 Phage_int_SAM_5 INT_ICEBs1_C_like RVT-Retrons gpmA Feature: gene Location: 17941-18567 bp Feature: domain Description: COG4333 Location: 18007-18436 bp Feature: domain Description: COG4333 Location: 18007-18436 bp Feature: gene Location: 18560-19690 bp Feature: domain Description: Phage_int_SAM_5 Location: 18749-19007 bp Feature: domain Description: Phage_int_SAM_5 Location: 18749-19007 bp Feature: domain Description: INT_ICEBs1_C_like Location: 19127-19628 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1912 7-1962 8 bp Feature: gene Location: 20524-21468 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20653-21199 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 0653-2 1199 bp Feature: gene Location: 22409-22525 bp Feature: gene Location: 22815-23030 bp Feature: domain Description: gpmA Location: 22818-23022 bp Feature: domain Description: gpmA Location: 2 2 818-2 302 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4333 (Uncharacterized protein ), Phage_int_SAM_5 (pfam13102), INT_ICEBs1_C_like (cd01189), RVT-Retrons, gpmA (PRK14120)