myRT

myRT report for GCA_001633665.1_ASM163366v1

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Seq: LUXG01000006.1 Lactobacillus plantarum strain Nizo2891 NODE_38, whole genome shotgun sequence (3712 bp)
Overview 1 RT 1: 201-2280 bp Neighborhood of RT #1 [201, 2280] GIIM RVT-GII Feature: gene Location: 201-419 bp Ori: KZU81140.1 Feature: domain Description: GIIM Note: maturase Location: 207-363 bp Feature: domain Description: GIIM Note: maturase Location: 207-363 bp Feature: gene Location: 457-1251 bp Ori: KZU81141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-1183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-1 1 83 bp Feature: gene Location: 1313-1465 bp Feature: gene Location: 2044-2280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII

Seq: LUXG01000057.1 Lactobacillus plantarum strain Nizo2891 NODE_9, whole genome shotgun sequence (151944 bp)
Overview 1 RT 1: 52895-58777 bp Neighborhood of RT #1 [52895, 58797] HTH_21 PHA02517 RVT-UG12 PRK00103 DegQ Feature: gene Location: 52895-53254 bp Ori: KZU76029.1 Feature: domain Description: HTH_21 Location: 53051-53228 bp Feature: domain Description: HTH_2 1 Location: 53051-532 2 8 bp Feature: gene Location: 53447-53791 bp Ori: KZU76030.1 Feature: domain Description: PHA02517 Location: 53453-53765 bp Feature: domain Description: PHA02 517 Location: 53453-53765 bp Feature: gene Location: 54613-56427 bp Ori: KZU76031.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 55132-55579 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 55132 -55579 bp Feature: gene Location: 56501-56980 bp Ori: KZU76032.1 Feature: domain Description: PRK00103 Location: 56504-56978 bp Feature: domain Description: PRK00103 Location: 56504-56978 bp Feature: gene Location: 57535-58797 bp Ori: KZU76033.1 Feature: domain Description: DegQ Location: 57655-58777 bp Feature: domain Description: DegQ Location: 57655-58777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG12, PRK00103 (rRNA large subunit methyltransferase; Provisional), DegQ (pfam08181)