myRT

myRT report for GCA_001635595.1_ASM163559v1

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Seq: LWFC01001776.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c265, whole genome shotgun sequence (6036 bp)
Overview 1 RT 1: 1456-5501 bp Neighborhood of RT #1 [1456, 5509] arc_metj PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1456-1836 bp Ori: KZY47243.1 Feature: domain Description: arc_metj Location: 1459-1564 bp Feature: domain Description: arc_metj Location: 1 459-1 564 bp Feature: gene Location: 2009-2494 bp Feature: domain Description: PHA02517 Location: 2012-2477 bp Feature: domain Description: PHA0251 7 Location: 201 2-2477 bp Feature: gene Location: 2578-4107 bp Ori: KZY47244.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2851-3583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2851 -3583 bp Feature: domain Description: GIIM Note: maturase Location: 3697-3856 bp Feature: domain Description: GIIM Note: maturase Location: 3697-3856 bp Feature: gene Location: 4770-5186 bp Feature: domain Description: PHA02517 Location: 4833-5187 bp Feature: domain Description: PHA0251 7 Location: 4833-51 87 bp Feature: gene Location: 5189-5509 bp Ori: KZY47245.1 Feature: domain Description: InsE Location: 5198-5501 bp Feature: domain Description: InsE Location: 51 98-5501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: LWFC01002619.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c688, whole genome shotgun sequence (7569 bp)
Overview 1 RT 1: 1-2336 bp Neighborhood of RT #1 [1, 2353] RVT_N RVT-GII MerR PRK13755 Feature: gene Location: 1-747 bp Feature: domain Description: RVT_N Location: 49-292 bp Feature: domain Description: RVT_N Location: 49-2 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-748 bp Feature: gene Location: 1530-1907 bp Ori: KZY41962.1 Feature: domain Description: MerR Location: 1539-1902 bp Feature: domain Description: MerR Location: 1539-1902 bp Feature: gene Location: 1964-2353 bp Ori: KZY41963.1 Feature: domain Description: PRK13755 Location: 1970-2336 bp Feature: domain Description: PRK13755 Location: 1970-2 336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, MerR (TIGR02051), PRK13755 (organomercurial transporter MerC)

Seq: LWFC01001719.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c2594, whole genome shotgun sequence (511 bp)
Overview 1 RT 1: 1-511 bp Neighborhood of RT #1 [1, 511] RVT-GII Feature: gene Location: 1-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LWFC01000941.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c186, whole genome shotgun sequence (7108 bp)
Overview 1 RT 1: 621-6931 bp Neighborhood of RT #1 [621, 6936] TnpB_IS66 LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-UG1 nitrilase_Rim1_like PRK09737 Feature: gene Location: 621-971 bp Ori: KZY51688.1 Feature: domain Description: TnpB_IS66 Location: 648-927 bp Feature: domain Description: TnpB_IS66 Location: 64 8-927 bp Feature: gene Location: 1054-2556 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1159-1351 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1159-1351 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2218-2413 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2218-24 13 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2434-2542 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 24 34 -254 2 bp Feature: gene Location: 2848-6540 bp Ori: KZY51689.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3457-3952 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 34 57-3952 bp Feature: domain Description: nitrilase_Rim1_like Location: 5932-6250 bp Feature: domain Description: nitrilase_Rim1_like Location: 5932-6250 bp Feature: gene Location: 6571-6936 bp Ori: KZY51690.1 Feature: domain Description: PRK09737 Location: 6607-6931 bp Feature: domain Description: PRK09737 Location: 6607-6931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-UG1, nitrilase_Rim1_like (cd07574), PRK09737 (type I restriction-modification system specificity subunit)

Seq: LWFC01002167.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c3095, whole genome shotgun sequence (619 bp)
Overview 1 RT 1: 1-469 bp Neighborhood of RT #1 [1, 619] RVT-GII Feature: gene Location: 1-619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LWFC01002080.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c2994, whole genome shotgun sequence (1560 bp)
Overview 1 RT 1: 1-1153 bp Neighborhood of RT #1 [1, 1290] RVT_N RVT-GII GIIM Feature: gene Location: 1-1290 bp Ori: KZY46376.1 Feature: domain Description: RVT_N Location: 4-196 bp Feature: domain Description: RVT_N Location: 4-196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-86 8 bp Feature: domain Description: GIIM Note: maturase Location: 928-1153 bp Feature: domain Description: GIIM Note: maturase Location: 928-1153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LWFC01001654.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c2534, whole genome shotgun sequence (4194 bp)
Overview 1 RT 1: 231-3192 bp Neighborhood of RT #1 [231, 3416] COG3666 DDE_Tnp_1_6 RVT_N RVT-GII GIIM Feature: gene Location: 231-1673 bp Ori: KZY47721.1 Feature: domain Description: COG3666 Location: 267-705 bp Feature: domain Description: COG3666 Location: 267 -7 05 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1263-1620 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1263-1620 bp Feature: gene Location: 1944-3416 bp Ori: KZY47722.1 Feature: domain Description: RVT_N Location: 1992-2235 bp Feature: domain Description: RVT_N Location: 1992-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2280-2907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2280-2907 bp Feature: domain Description: GIIM Note: maturase Location: 2967-3192 bp Feature: domain Description: GIIM Note: maturase Location: 2967 -3192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LWFC01001692.1 Pseudoalteromonas shioyasakiensis strain HI0053 HI0053_c2569, whole genome shotgun sequence (2016 bp)
Overview 1 RT 1: 689-1937 bp Neighborhood of RT #1 [689, 2016] RVT_N RVT-GII GIIM Feature: gene Location: 689-2016 bp Ori: KZY47606.1 Feature: domain Description: RVT_N Location: 737-980 bp Feature: domain Description: RVT_N Location: 737-98 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1652 bp Feature: domain Description: GIIM Note: maturase Location: 1712-1937 bp Feature: domain Description: GIIM Note: maturase Location: 1712-1937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)