myRT

myRT report for GCA_001636105.1_ASM163610v1

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Seq: LNJT01000001.1 Burkholderia sp. MSMB1589WGS MSMB1589WGS_2, whole genome shotgun sequence (310876 bp)
Overview 1 RT 1: 140182-145219 bp Neighborhood of RT #1 [140182, 145257] YidB RVT-GII GIIM TauA PRK10406 Feature: gene Location: 140182-140856 bp Feature: gene Location: 140872-141294 bp Feature: domain Description: YidB Location: 140893-141229 bp Feature: domain Description: YidB Location: 1 40893-1 41 229 bp Feature: gene Location: 141416-142822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141755-142370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 755-1 42370 bp Feature: domain Description: GIIM Note: maturase Location: 142424-142637 bp Feature: domain Description: GIIM Note: maturase Location: 1 42424-1 42637 bp Feature: gene Location: 143475-143813 bp Feature: domain Description: TauA Location: 143544-143805 bp Feature: domain Description: TauA Location: 1 43544-1 43805 bp Feature: gene Location: 143953-145257 bp Feature: domain Description: PRK10406 Location: 143977-145219 bp Feature: domain Description: PRK1 0406 Location: 1 43977-1 4521 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YidB (COG3753), RVT-GII, GIIM (pfam08388), TauA (COG4521), PRK10406 (alpha-ketoglutarate transporter; Provisional)

Seq: LNJT01000007.1 Burkholderia sp. MSMB1589WGS MSMB1589WGS_8, whole genome shotgun sequence (2162104 bp)
Overview 1 RT 1: 301360-307821 bp 2 RT 2: 1810508-1815250 bp Neighborhood of RT #1 [301360, 307886] Flp COG3464 RVT-GII GIIM chaperone_ClpB PRK11014 Neighborhood of RT #2 [1810508, 1815450] AnsP RVT-GII GIIM CytC552 PRK11023 Feature: gene Location: 301360-301578 bp Feature: domain Description: Flp Location: 301390-301558 bp Feature: domain Description: Flp Location: 301390-301558 bp Feature: gene Location: 302039-302497 bp Feature: domain Description: COG3464 Location: 302075-302351 bp Feature: domain Description: COG3464 Location: 302 075-302 351 bp Feature: gene Location: 302648-303430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302654-302978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 654-302 978 bp Feature: domain Description: GIIM Note: maturase Location: 303032-303248 bp Feature: domain Description: GIIM Note: maturase Location: 303032 -3032 48 bp Feature: gene Location: 304589-307186 bp Feature: domain Description: chaperone_ClpB Location: 304607-307163 bp Feature: domain Description: chaperone_ClpB Location: 304607-307163 bp Feature: gene Location: 307389-307886 bp Feature: domain Description: PRK11014 Location: 307392-307821 bp Feature: domain Description: PRK11014 Location: 307392 -30782 1 bp Feature: gene Location: 1810508-1810642 bp Feature: gene Location: 1810734-1812086 bp Feature: domain Description: AnsP Location: 1810737-1812033 bp Feature: domain Description: AnsP Location: 1810737-1812 033 bp Feature: gene Location: 1812272-1813678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1812611-1813226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1812 611-18132 2 6 bp Feature: domain Description: GIIM Note: maturase Location: 1813280-1813496 bp Feature: domain Description: GIIM Note: maturase Location: 18132 80-1813496 bp Feature: gene Location: 1814291-1814650 bp Feature: domain Description: CytC552 Location: 1814360-1814648 bp Feature: domain Description: CytC552 Location: 1814360-1814648 bp Feature: gene Location: 1814650-1815450 bp Feature: domain Description: PRK11023 Location: 1814722-1815250 bp Feature: domain Description: PRK1102 3 Location: 181472 2 -18152 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Flp (COG3847), COG3464 (Transposase ), RVT-GII, GIIM (pfam08388), chaperone_ClpB (TIGR03346), PRK11014 (HTH-type transcriptional repressor NsrR), AnsP (COG1113), CytC552 (COG4654), PRK11023 (divisome-associated lipoprotein YraP)

Seq: LNJT01000008.1 Burkholderia sp. MSMB1589WGS MSMB1589WGS_9, whole genome shotgun sequence (2853635 bp)
Overview 1 RT 1: 528622-534587 bp 2 RT 2: 768748-773484 bp 3 RT 3: 2125366-2129404 bp Neighborhood of RT #1 [528622, 534595] TIGR02594 AzgA RVT-GII GIIM DUF1488 DUF2964 Neighborhood of RT #2 [768748, 773621] DDE_Tnp_ISL3 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII TnpB_IS66 InsE Neighborhood of RT #3 [2125366, 2129631] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII TnpB_IS66 HTH_Tnp_1 Feature: gene Location: 528622-529089 bp Feature: domain Description: TIGR02594 Location: 528667-529066 bp Feature: domain Description: TIGR02594 Location: 528667-529066 bp Feature: gene Location: 529482-530783 bp Feature: domain Description: AzgA Location: 529488-530769 bp Feature: domain Description: AzgA Location: 529488-53 0769 bp Feature: gene Location: 531034-532440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 531373-531988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 13 73 -53 1988 bp Feature: domain Description: GIIM Note: maturase Location: 532042-532258 bp Feature: domain Description: GIIM Note: maturase Location: 53 2042-53 2258 bp Feature: gene Location: 532943-533230 bp Feature: domain Description: DUF1488 Location: 532952-533183 bp Feature: domain Description: DUF1488 Location: 53 2952-53 3 183 bp Feature: gene Location: 533768-534595 bp Feature: domain Description: DUF2964 Location: 534404-534587 bp Feature: domain Description: DUF2964 Location: 53 4404-53 4587 bp Feature: gene Location: 768748-769311 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 769087-769306 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 769087-7693 06 bp Feature: gene Location: 769342-770895 bp Feature: domain Description: LZ_Tnp_IS66 Location: 769444-769657 bp Feature: domain Description: LZ_Tnp_IS66 Location: 769444-769657 bp Feature: domain Description: zf-IS66 Location: 769684-769804 bp Feature: domain Description: zf-IS66 Location: 769684-769804 bp Feature: domain Description: DDE_Tnp_IS66 Location: 769855-770710 bp Feature: domain Description: DDE_Tnp_IS66 Location: 769855-770710 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 770734-770842 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 77073 4-770842 bp Feature: gene Location: 771038-772399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771329-772019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7713 29-772019 bp Feature: gene Location: 772849-773181 bp Feature: domain Description: TnpB_IS66 Location: 772876-773164 bp Feature: domain Description: TnpB_IS66 Location: 772876-773 164 bp Feature: gene Location: 773178-773621 bp Feature: domain Description: InsE Location: 773262-773484 bp Feature: domain Description: InsE Location: 773 262-773 484 bp Feature: gene Location: 2125366-2126787 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2125372-2125555 bp Feature: domain Description: LZ_Tnp_IS66 Location: 21253 72-2125555 bp Feature: domain Description: zf-IS66 Location: 2125573-2125702 bp Feature: domain Description: zf-IS66 Location: 2125573 -2125702 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2125744-2126602 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2125744-2126602 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2126623-2126734 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2126623 -212673 4 bp Feature: gene Location: 2126814-2126963 bp Feature: gene Location: 2127096-2128457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127387-2128077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21273 87-2128077 bp Feature: gene Location: 2128574-2129206 bp Feature: domain Description: TnpB_IS66 Location: 2128592-2128880 bp Feature: domain Description: TnpB_IS66 Location: 2128592-2128880 bp Feature: gene Location: 2129212-2129631 bp Feature: domain Description: HTH_Tnp_1 Location: 2129248-2129404 bp Feature: domain Description: HTH_Tnp_1 Location: 2129248-2129404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02594 (TIGR02594 family protein), AzgA (COG2252), RVT-GII, GIIM (pfam08388), DUF1488 (pfam07369), DUF2964 (pfam11177), DDE_Tnp_ISL3 (pfam01610), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), InsE (COG2963), HTH_Tnp_1 (pfam01527)