myRT

myRT report for GCA_001636135.1_ASM163613v1

Download annotations/find similar RTs

Seq: LTEA01000225.1 Pediococcus damnosus strain BM-PD14610 scaffold102, whole genome shotgun sequence (6938 bp)
Overview 1 RT 1: 937-6609 bp Neighborhood of RT #1 [937, 6609] TaqI_C YeeA Eco57I TaqI_C RVT-AbiP2 Feature: gene Location: 937-1314 bp Feature: domain Description: TaqI_C Location: 961-1126 bp Feature: domain Description: TaqI_C Location: 961 -1 1 26 bp Feature: gene Location: 1301-4363 bp Feature: domain Description: YeeA Location: 2498-3134 bp Feature: domain Description: YeeA Location: 2498-31 34 bp Feature: domain Description: Eco57I Location: 3554-3881 bp Feature: domain Description: Eco57I Location: 3554-3881 bp Feature: domain Description: TaqI_C Location: 4184-4328 bp Feature: domain Description: TaqI_C Location: 41 84-4328 bp Feature: gene Location: 4663-5757 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 4672-5125 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 4672-51 25 bp Feature: gene Location: 5754-6182 bp Feature: gene Location: 6412-6609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TaqI_C (pfam12950), YeeA (COG1002), Eco57I (pfam07669), RVT-AbiP2

Seq: LTEA01000227.1 Pediococcus damnosus strain BM-PD14610 scaffold210, whole genome shotgun sequence (1964 bp)
Overview 1 RT 1: 2-1929 bp Neighborhood of RT #1 [2, 1937] RVT-GII GIIM ManX PRK09855 Feature: gene Location: 2-694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38-2 48 bp Feature: domain Description: GIIM Note: maturase Location: 305-530 bp Feature: domain Description: GIIM Note: maturase Location: 305-530 bp Feature: gene Location: 1084-1527 bp Feature: domain Description: ManX Location: 1099-1507 bp Feature: domain Description: ManX Location: 1099-1507 bp Feature: gene Location: 1554-1937 bp Feature: domain Description: PRK09855 Location: 1557-1929 bp Feature: domain Description: PRK09855 Location: 1557-192 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ManX (COG2893), PRK09855 (PTS N-acetylgalactosamine transporter subunit IID)

Seq: LTEA01000019.1 Pediococcus damnosus strain BM-PD14610 scaffold234, whole genome shotgun sequence (655 bp)
Overview 1 RT 1: 174-654 bp Neighborhood of RT #1 [174, 654] RVT-GII Feature: gene Location: 174-494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177-3 84 bp Feature: gene Location: 523-654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII