myRT

myRT report for GCA_001636475.1_ASM163647v1

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Seq: KV440955.1 Bacillus simplex strain FJAT-2295 genomic scaffold Scaffold1, whole genome shotgun sequence (3171336 bp)
Overview 1 RT 1: 134591-140790 bp 2 RT 2: 1526535-1533208 bp 3 RT 3: 2871198-2874141 bp Neighborhood of RT #1 [134591, 140790] AdeC CwlT_like RVT-GII HNHc CwlT_like Spr Neighborhood of RT #2 [1526535, 1533234] YdfG carb_red_PTCR-like_SDR_c carb_red_PTCR-like_SDR_c RVT-GII GIIM RVT-GII GIIM HTH_31 MLTR_LBD Neighborhood of RT #3 [2871198, 2874146] DUF4405 Cytochrome_P460 RVT-GII GIIM Tra5 Feature: gene Location: 134591-136396 bp Feature: domain Description: AdeC Location: 134621-136352 bp Feature: domain Description: AdeC Location: 1 34621 -1 36352 bp Feature: gene Location: 136843-137022 bp Feature: domain Description: CwlT_like Location: 136879-137005 bp Feature: domain Description: CwlT_like Location: 1 36879-1 37005 bp Feature: gene Location: 137860-139569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138046-138751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 38046-1 38751 bp Feature: domain Description: HNHc Note: nucleases Location: 139294-139420 bp Feature: domain Description: HNHc Note: nucleases Location: 1 39294-1 39420 bp Feature: gene Location: 139589-140239 bp Feature: domain Description: CwlT_like Location: 139679-139826 bp Feature: domain Description: CwlT_like Location: 1 39679-1 39826 bp Feature: domain Description: Spr Location: 139877-140195 bp Feature: domain Description: Spr Location: 1 39877-1 401 95 bp Feature: gene Location: 140242-140790 bp Feature: gene Location: 1526535-1527281 bp Feature: domain Description: YdfG Location: 1526541-1527279 bp Feature: domain Description: YdfG Location: 1 526541 -1 527279 bp Feature: gene Location: 1527393-1528100 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 1527411-1527849 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 1 52741 1 -1 527849 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 1527867-1528098 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 1 527867-1 528098 bp Feature: gene Location: 1528350-1529273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1528356-1528815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 528356-1 52881 5 bp Feature: domain Description: GIIM Note: maturase Location: 1528875-1529085 bp Feature: domain Description: GIIM Note: maturase Location: 1 528875-1 529085 bp Feature: gene Location: 1529629-1530891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1529827-1530445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 529827-1 530445 bp Feature: domain Description: GIIM Note: maturase Location: 1530496-1530706 bp Feature: domain Description: GIIM Note: maturase Location: 1 530496-1 530706 bp Feature: gene Location: 1531513-1532184 bp Feature: gene Location: 1532371-1533234 bp Feature: domain Description: HTH_31 Location: 1532488-1532653 bp Feature: domain Description: HTH_31 Location: 1 532488-1 532653 bp Feature: domain Description: MLTR_LBD Location: 1532719-1533208 bp Feature: domain Description: MLTR_LBD Location: 1 53271 9-1 533208 bp Feature: gene Location: 2871198-2871941 bp Feature: domain Description: DUF4405 Location: 2871414-2871588 bp Feature: domain Description: DUF4405 Location: 2871 41 4-2871 588 bp Feature: gene Location: 2872004-2872741 bp Feature: domain Description: Cytochrome_P460 Location: 2872205-2872511 bp Feature: domain Description: Cytochrome_P460 Location: 2872205-287251 1 bp Feature: gene Location: 2873001-2873669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2873034-2873211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2873034-287321 1 bp Feature: domain Description: GIIM Note: maturase Location: 2873271-2873481 bp Feature: domain Description: GIIM Note: maturase Location: 2873271 -2873481 bp Feature: gene Location: 2873802-2874146 bp Feature: domain Description: Tra5 Location: 2873805-2874141 bp Feature: domain Description: Tra5 Location: 2873805-28741 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdeC (COG1001), CwlT_like, RVT-GII, HNHc (smart00507), Spr (COG0791), YdfG (COG4221), carb_red_PTCR-like_SDR_c (cd05324), GIIM (pfam08388), HTH_31 (pfam13560), MLTR_LBD (pfam17765)
DUF4405 (pfam14358), Cytochrome_P460 (pfam16694), Tra5 (COG2801)

Seq: KV440956.1 Bacillus simplex strain FJAT-2295 genomic scaffold Scaffold2, whole genome shotgun sequence (1760672 bp)
Overview 1 RT 1: 478731-484792 bp Neighborhood of RT #1 [478731, 484792] GntR GntR RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 478731-479138 bp Feature: domain Description: GntR Location: 478740-479085 bp Feature: domain Description: GntR Location: 478740-479085 bp Feature: gene Location: 479166-479462 bp Feature: domain Description: GntR Location: 479205-479460 bp Feature: domain Description: GntR Location: 4792 05-479460 bp Feature: gene Location: 480289-481563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480490-481105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480490-481105 bp Feature: domain Description: GIIM Note: maturase Location: 481165-481375 bp Feature: domain Description: GIIM Note: maturase Location: 481165-481375 bp Feature: gene Location: 482315-483577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482513-483131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 513-483131 bp Feature: domain Description: GIIM Note: maturase Location: 483182-483392 bp Feature: domain Description: GIIM Note: maturase Location: 483182 -483392 bp Feature: gene Location: 484167-484484 bp Feature: gene Location: 484637-484792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GntR (pfam00392), RVT-GII, GIIM (pfam08388)

Seq: KV440957.1 Bacillus simplex strain FJAT-2295 genomic scaffold Scaffold3, whole genome shotgun sequence (719444 bp)
Overview 1 RT 1: 473061-480839 bp 2 RT 2: 676706-682928 bp Neighborhood of RT #1 [473061, 480886] PRK01622 RVT-GII GIIM cya_phycin_syn cyanophycinase Neighborhood of RT #2 [676706, 682951] ComK IDEAL RVT-GII GIIM YitT M48A_Zmpste24p_like Feature: gene Location: 473061-473348 bp Feature: gene Location: 473377-474168 bp Feature: domain Description: PRK01622 Location: 473380-474115 bp Feature: domain Description: PRK01622 Location: 473 3 80-474115 bp Feature: gene Location: 474231-475505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474432-475047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47443 2-475047 bp Feature: domain Description: GIIM Note: maturase Location: 475107-475317 bp Feature: domain Description: GIIM Note: maturase Location: 475107-4753 17 bp Feature: gene Location: 477456-480077 bp Feature: domain Description: cya_phycin_syn Location: 477462-480024 bp Feature: domain Description: cya_phycin_syn Location: 477462-480024 bp Feature: gene Location: 480074-480886 bp Feature: domain Description: cyanophycinase Location: 480092-480839 bp Feature: domain Description: cyanophycinase Location: 480092-48083 9 bp Feature: gene Location: 676706-677269 bp Feature: domain Description: ComK Location: 676736-677180 bp Feature: domain Description: ComK Location: 67673 6-677180 bp Feature: gene Location: 677576-677821 bp Feature: domain Description: IDEAL Location: 677684-677789 bp Feature: domain Description: IDEAL Location: 677684-677789 bp Feature: gene Location: 677910-679184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678111-678726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678111-678726 bp Feature: domain Description: GIIM Note: maturase Location: 678786-678996 bp Feature: domain Description: GIIM Note: maturase Location: 678786-678996 bp Feature: gene Location: 680656-681465 bp Feature: domain Description: YitT Location: 680665-681457 bp Feature: domain Description: YitT Location: 680665-681457 bp Feature: gene Location: 681608-682951 bp Feature: domain Description: M48A_Zmpste24p_like Location: 681716-682928 bp Feature: domain Description: M48A_Zmpste24p_like Location: 681716-682928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01622 (membrane protein insertase YidC), RVT-GII, GIIM (pfam08388), cya_phycin_syn (TIGR02068), cyanophycinase (TIGR02069), ComK (pfam06338), IDEAL (smart00914), YitT (COG1284), M48A_Zmpste24p_like (cd07343)

Seq: KV440959.1 Bacillus simplex strain FJAT-2295 genomic scaffold Scaffold5, whole genome shotgun sequence (166708 bp)
Overview 1 RT 1: 125608-130816 bp Neighborhood of RT #1 [125608, 130816] T4SS-DNA_transf RVT-GII HNHc T4SS-DNA_transf Feature: gene Location: 125608-126042 bp Feature: gene Location: 126044-126265 bp Feature: domain Description: T4SS-DNA_transf Location: 126146-126248 bp Feature: domain Description: T4 SS-DNA_transf Location: 12614 6-12624 8 bp Feature: gene Location: 127001-128827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127301-128000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127301-128000 bp Feature: domain Description: HNHc Note: nucleases Location: 128573-128711 bp Feature: domain Description: HNHc Note: nucleases Location: 128573-128711 bp Feature: gene Location: 128992-130323 bp Feature: domain Description: T4SS-DNA_transf Location: 128998-130060 bp Feature: domain Description: T4 SS-DNA_transf Location: 128998-130060 bp Feature: gene Location: 130325-130816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, HNHc (smart00507)