myRT

myRT report for GCA_001636575.1_ASM163657v1

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Seq: LRTJ01000153.1 Frankia casuarinae strain BR AAY23_1156, whole genome shotgun sequence (3214 bp)
Overview 1 RT 1: 1502-2862 bp Neighborhood of RT #1 [1502, 3017] COG3464 RVT-GII GIIM Feature: gene Location: 1502-1813 bp Ori: OAA18065.1 Feature: domain Description: COG3464 Location: 1586-1808 bp Feature: domain Description: COG3464 Location: 1 586-1 808 bp Feature: gene Location: 2048-2410 bp Feature: gene Location: 2427-3017 bp Ori: OAA18067.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2433-2568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2433-2568 bp Feature: domain Description: GIIM Note: maturase Location: 2637-2862 bp Feature: domain Description: GIIM Note: maturase Location: 2637-2862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LRTJ01000087.1 Frankia casuarinae strain BR AAY23_1088, whole genome shotgun sequence (26521 bp)
Overview 1 RT 1: 19238-26444 bp Neighborhood of RT #1 [19238, 26476] PIN_MtVapC26-like RVT_N RVT-GII GIIM KOG0776 Feature: gene Location: 19238-19666 bp Ori: OAA20707.1 Feature: domain Description: PIN_MtVapC26-like Location: 19247-19643 bp Feature: domain Description: PIN_MtVapC2 6-like Location: 192 47-19643 bp Feature: gene Location: 21107-21955 bp Feature: gene Location: 22884-24722 bp Ori: OAA20709.1 Feature: domain Description: RVT_N Location: 23016-23256 bp Feature: domain Description: RVT_N Location: 2 3016-2 32 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23313-23958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3313-2 3958 bp Feature: domain Description: GIIM Note: maturase Location: 24027-24255 bp Feature: domain Description: GIIM Note: maturase Location: 2 402 7-2 42 55 bp Feature: gene Location: 24822-25610 bp Feature: gene Location: 25991-26476 bp Ori: OAA20711.1 Feature: domain Description: KOG0776 Location: 26009-26444 bp Feature: domain Description: KOG0776 Location: 2 6009-2 6444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_MtVapC26-like (cd18696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KOG0776 (KOG0776, Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase )

Seq: LRTJ01000084.1 Frankia casuarinae strain BR AAY23_1085, whole genome shotgun sequence (40149 bp)
Overview 1 RT 1: 31124-38083 bp Neighborhood of RT #1 [31124, 38151] KAS_III PinE Zn_ribbon_recom HTH_17 excise HTH_17 RVT-GII MFS_LmrB_MDR_like Feature: gene Location: 31124-32200 bp Ori: OAA20829.1 Feature: domain Description: KAS_III Location: 31142-32099 bp Feature: domain Description: KAS_III Location: 3 1142-3 2099 bp Feature: gene Location: 32908-35397 bp Ori: OAA20830.1 Feature: domain Description: PinE Location: 32956-33547 bp Feature: domain Description: PinE Location: 3 2956-3 3 547 bp Feature: domain Description: Zn_ribbon_recom Location: 33895-34060 bp Feature: domain Description: Zn_ribbon_recom Location: 3 3 895-3 4060 bp Feature: domain Description: HTH_17 Location: 34753-34864 bp Feature: domain Description: HTH_17 Location: 3 4753 -3 4864 bp Feature: domain Description: excise Location: 34969-35056 bp Feature: domain Description: excise Location: 3 4969-3 5056 bp Feature: domain Description: HTH_17 Location: 35197-35296 bp Feature: domain Description: HTH_17 Location: 3 5197-3 5296 bp Feature: gene Location: 35812-36024 bp Ori: OAA20831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35971-36019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5971-3 6019 bp Feature: gene Location: 36537-36689 bp Feature: gene Location: 36676-38151 bp Ori: OAA20833.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 36763-38083 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 3 6763 -3 8083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAS_III (cd00830), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), excise (TIGR01764), RVT-GII, MFS_LmrB_MDR_like (cd17503)

Seq: LRTJ01000178.1 Frankia casuarinae strain BR AAY23_1181, whole genome shotgun sequence (1556 bp)
Overview 1 RT 1: 221-1223 bp Neighborhood of RT #1 [221, 1411] RVT-GII Feature: gene Location: 221-1411 bp Ori: OAA17914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 533-1223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LRTJ01000060.1 Frankia casuarinae strain BR AAY23_1061, whole genome shotgun sequence (65794 bp)
Overview 1 RT 1: 32845-38296 bp Neighborhood of RT #1 [32845, 38322] RVT-GII GIIM PIN_MtVapC27-VapC40_like KOG2565 Feature: gene Location: 32845-33219 bp Feature: gene Location: 33228-34349 bp Feature: gene Location: 35118-36494 bp Ori: OAA22687.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35433-36063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 433-36063 bp Feature: domain Description: GIIM Note: maturase Location: 36150-36354 bp Feature: domain Description: GIIM Note: maturase Location: 3615 0-3635 4 bp Feature: gene Location: 36663-36875 bp Ori: OAA22688.1 Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 36738-36858 bp Feature: domain Description: PIN_MtVapC27-VapC40_like Location: 36738-3685 8 bp Feature: gene Location: 37063-38322 bp Ori: OAA22689.1 Feature: domain Description: KOG2565 Location: 37120-38296 bp Feature: domain Description: KOG25 65 Location: 37120-38296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PIN_MtVapC27-VapC40_like (cd18681), KOG2565 (KOG2565, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) )