myRT

myRT report for GCA_001636845.1_ASM163684v1

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Seq: LITT01000032.1 Clostridium ljungdahlii strain ERI-2 scaffold37, whole genome shotgun sequence (13540 bp)
Overview 1 RT 1: 9377-13503 bp Neighborhood of RT #1 [9377, 13520] Adenyl_transf Mop RVT-GII HNHc DDE_Tnp_ISL3 Feature: gene Location: 9377-9796 bp Feature: domain Description: Adenyl_transf Location: 9383-9758 bp Feature: domain Description: Adenyl_transf Location: 9383-9758 bp Feature: gene Location: 10201-10296 bp Feature: domain Description: Mop Location: 10213-10294 bp Feature: domain Description: Mop Location: 1 021 3-1 0294 bp Feature: gene Location: 11294-13030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11615-12314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 61 5-1 231 4 bp Feature: domain Description: HNHc Note: nucleases Location: 12854-12992 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2854-1 2992 bp Feature: gene Location: 13212-13520 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 13218-13503 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 321 8-1 3503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mop (TIGR00638), RVT-GII, HNHc (smart00507), DDE_Tnp_ISL3 (pfam01610), Adenyl_transf (pfam04439)

Seq: LITT01000005.1 Clostridium ljungdahlii strain ERI-2 scaffold14, whole genome shotgun sequence (121840 bp)
Overview 1 RT 1: 39515-43830 bp Neighborhood of RT #1 [39515, 43830] PRK10657 NapF RVT-GII GIIM Feature: gene Location: 39515-40681 bp Feature: domain Description: PRK10657 Location: 39518-40673 bp Feature: domain Description: PRK10657 Location: 39518-40673 bp Feature: gene Location: 40720-41418 bp Feature: domain Description: NapF Location: 40735-40915 bp Feature: domain Description: NapF Location: 40735-40915 bp Feature: gene Location: 41604-43034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41976-42594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41976-42 594 bp Feature: domain Description: GIIM Note: maturase Location: 42645-42879 bp Feature: domain Description: GIIM Note: maturase Location: 42 645-42 879 bp Feature: gene Location: 43507-43596 bp Feature: gene Location: 43732-43830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10657 (isoaspartyl dipeptidase; Provisional), NapF (COG1145), RVT-GII, GIIM (pfam08388)

Seq: LITT01000014.1 Clostridium ljungdahlii strain ERI-2 scaffold21, whole genome shotgun sequence (57058 bp)
Overview 1 RT 1: 53869-56936 bp Neighborhood of RT #1 [53869, 57022] PotB GLY1 RVT-GII GIIM Feature: gene Location: 53869-54696 bp Feature: domain Description: PotB Location: 53881-54664 bp Feature: domain Description: PotB Location: 53 881-54664 bp Feature: gene Location: 54962-55999 bp Feature: domain Description: GLY1 Location: 54965-55982 bp Feature: domain Description: GLY1 Location: 54965-55982 bp Feature: gene Location: 56234-57022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56237-56660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5623 7-56660 bp Feature: domain Description: GIIM Note: maturase Location: 56726-56936 bp Feature: domain Description: GIIM Note: maturase Location: 56726-5693 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PotB (COG1176), GLY1 (COG2008), RVT-GII, GIIM (pfam08388)

Seq: LITT01000011.1 Clostridium ljungdahlii strain ERI-2 scaffold1, whole genome shotgun sequence (492585 bp)
Overview 1 RT 1: 489269-492440 bp Neighborhood of RT #1 [489269, 492526] COG2405 RVT-GII GIIM GIIM Feature: gene Location: 489269-489514 bp Feature: gene Location: 489871-490110 bp Feature: domain Description: COG2405 Location: 489877-490102 bp Feature: domain Description: COG24 05 Location: 4 89877-4 90102 bp Feature: gene Location: 490440-491690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490644-491301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 9064 4 -4 91301 bp Feature: domain Description: GIIM Note: maturase Location: 491382-491613 bp Feature: domain Description: GIIM Note: maturase Location: 4 91382-4 91613 bp Feature: gene Location: 492251-492526 bp Feature: domain Description: GIIM Note: maturase Location: 492257-492440 bp Feature: domain Description: GIIM Note: maturase Location: 4 92257-4 924 4 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-GII, GIIM (pfam08388)